View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_high_161 (Length: 206)

Name: NF1390_high_161
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_high_161
NF1390_high_161
[»] chr8 (2 HSPs)
chr8 (1-68)||(7934579-7934646)
chr8 (1-68)||(34579038-34579105)
[»] chr2 (1 HSPs)
chr2 (1-68)||(45623619-45623686)


Alignment Details
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7934646 - 7934579
Alignment:
Q  1 tataaaacttgccaaacagacattattaccgtaacttctaaccaatttcctccaccatattaccataa 68  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7934646 tataaaacttgccaaacagacattattaccataacttctaaccaatttcctccaccatattaccataa 7934579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34579038 - 34579105
Alignment:
Q  1 tataaaacttgccaaacagacattattaccgtaacttctaaccaatttcctccaccatattaccataa 68  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34579038 tataaaacttgccaaacagacattattaccataacttctaaccaatttcctccaccatattaccataa 34579105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 45623619 - 45623686
Alignment:
Q  1 tataaaacttgccaaacagacattattaccgtaacttctaaccaatttcctccaccatattaccataa 68  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45623619 tataaaacttgccaaacagacattattaccataacttctaaccaatttcctccaccatattaccataa 45623686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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