View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_162 (Length: 206)
Name: NF1390_high_162
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_162 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 13879567 - 13879675
Alignment:
| Q |
12 |
cacagacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatc |
111 |
Q |
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| T |
13879567 |
cacagacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatc |
13879666 |
T |
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| Q |
112 |
atcatcatc |
120 |
Q |
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| T |
13879667 |
atcatcatc |
13879675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 13875350 - 13875448
Alignment:
| Q |
12 |
cacagacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagat |
110 |
Q |
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| T |
13875350 |
cacagacatcaatctcttccttcctcacgttgttggcgaccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagat |
13875448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 13879697 - 13879734
Alignment:
| Q |
145 |
cagctcattggtgttgaaatagtgaatgagtcgaggag |
182 |
Q |
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| T |
13879697 |
cagctcattggtgttgaaatagcgaatgagtcgtggag |
13879734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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