View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390_high_163 (Length: 203)
Name: NF1390_high_163
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_163 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 46167302 - 46167470
Alignment:
| Q |
19 |
aatatatctctatgtaactttactatcaatgtgatttcctaacacaggcgggtccaagaatttgccttggcaaggagtttgcatacagacagatgaagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46167302 |
aatatatctctatgtaactttactatcaatgtgatttcctaacacaggcgggtccaagaatttgccttggcaaggagtttgcatacagacagatgaagat |
46167401 |
T |
|
| Q |
119 |
attttctgcagttctgttaggtagccacagtttcaaactagcagaccaaaataaattggtgaaatatag |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46167402 |
attttctgcagttctgttaggtagccacagtttcaaactagcagaccaaaataaattggtgaaatatag |
46167470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 46160794 - 46160954
Alignment:
| Q |
27 |
tctatgtaactttactatcaatgtgatttcctaacacaggcgggtccaagaatttgccttggcaaggagtttgcatacagacagatgaagatattttctg |
126 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46160794 |
tctatgtaactttactgtcaatgtgacatcctaacacaggcgggtccaagaatttgtcttggcaaggagtttgtatacagacagatgaagatattttctg |
46160893 |
T |
|
| Q |
127 |
cagttctgttaggtagccacagtttcaaactagcagaccaaaataaattggtgaaatatag |
187 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46160894 |
cagttctgttaggtagtcacaacttcaaactagcagaccaaaatagattggtgaaatatag |
46160954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 187
Target Start/End: Original strand, 46182598 - 46182718
Alignment:
| Q |
67 |
cgggtccaagaatttgccttggcaaggagtttgcatacagacagatgaagatattttctgcagttctgttaggtagccacagtttcaaactagcagacca |
166 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||| | |||||||||||||| |
|
|
| T |
46182598 |
cgggtccaagagtttgccttggcaagaagtttgcatacagacatataaagatattttctgcagttctattaggtagccacaactataaactagcagacca |
46182697 |
T |
|
| Q |
167 |
aaataaattggtgaaatatag |
187 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46182698 |
aaataaattggtgaaatatag |
46182718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 10440 times since January 2019
Visitors: 7978