View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_20 (Length: 643)
Name: NF1390_high_20
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1390_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 193 - 419
Target Start/End: Original strand, 29057878 - 29058114
Alignment:
Q |
193 |
ataaacatctcccctttcaatttaacacggttagctattatgttaaaagtacatcttctat----------ctattgatgatgataatcttcatccacca |
282 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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T |
29057878 |
ataaacatctcccctttcaatttaacacggttagttattctgttaaaagtacatcttctatttttctgattctattgatgatgataatcttcatccacca |
29057977 |
T |
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Q |
283 |
atcctatatatttctgccattttattttaagctttcctttatttcaattatttcatatctcaattatcatagttcactgctttaccggaggagtactaaa |
382 |
Q |
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T |
29057978 |
aacctatatatttctgccattttattttaagcttttctttatttcaattatttcatatctcaattatcatagttcactgctttatcggaggaatattaaa |
29058077 |
T |
|
Q |
383 |
aaaccataggccgttaactcttgcctgaacaatattt |
419 |
Q |
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|||||||||||||||| ||||| |||||||||||||| |
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T |
29058078 |
aaaccataggccgttatctctttcctgaacaatattt |
29058114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 426 - 481
Target Start/End: Complemental strand, 36925963 - 36925908
Alignment:
Q |
426 |
tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatga |
481 |
Q |
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|||| |||||||||||||| ||||||||||||||||| ||||||||| ||| |||| |
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T |
36925963 |
ttttgatttctatgattattcaataattaaattcattatattcaaccgatcaatga |
36925908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 22255673 - 22255710
Alignment:
Q |
117 |
ttagattaaggagtagcacatattttatgatggtctgt |
154 |
Q |
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||||||||| ||| |||||||||||||||||||||||| |
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T |
22255673 |
ttagattaaagaggagcacatattttatgatggtctgt |
22255710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 426 - 546
Target Start/End: Original strand, 33455400 - 33455520
Alignment:
Q |
426 |
tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatattatcacgaattt |
525 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
33455400 |
tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatattatcacgaattt |
33455499 |
T |
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Q |
526 |
gatatatttcagattgggaag |
546 |
Q |
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||||||||||||||||||||| |
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T |
33455500 |
gatatatttcagattgggaag |
33455520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 33455773 - 33455700
Alignment:
Q |
112 |
aacggttagattaaggagtagcacatattttatgatggtctgttcacaccatatattttccacacatcatcttc |
185 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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T |
33455773 |
aacggttagattaaggagtaacacatattttatgatggtctgttcacaccatatatattccacacatcatcttc |
33455700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 11354222 - 11354172
Alignment:
Q |
253 |
tctattgatgatgataatcttcatccaccaatcctatatatttctgccatttt |
305 |
Q |
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T |
11354222 |
tctattgatgatgataatcttcatccactaaacc--tatatttctgccatttt |
11354172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 426 - 546
Target Start/End: Original strand, 29060359 - 29060479
Alignment:
Q |
426 |
tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatattatcacgaattt |
525 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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T |
29060359 |
tttttatttctacgattatgcaataattaaattcattgtattcaaccaatcaatgagtaaatttcttataaatttcagctcatcatatcatcacgaattt |
29060458 |
T |
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Q |
526 |
gatatatttcagattgggaag |
546 |
Q |
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||||||||||||||||||||| |
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T |
29060459 |
gatatatttcagattgggaag |
29060479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 29060765 - 29060658
Alignment:
Q |
79 |
gggaattgtttcccaccatgggaaaannnnnnn-aacggttagattaaggagtagcacatattttatgatggtctgttcacaccatatattttccacaca |
177 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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T |
29060765 |
gggaattgtttcccaccatgggaaagttttttttaacggttagattaaggagtagcgcatattttatgatggtctgttcacaccatatattttccacaca |
29060666 |
T |
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Q |
178 |
tcatcttc |
185 |
Q |
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|||||||| |
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T |
29060665 |
tcatcttc |
29060658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 426 - 546
Target Start/End: Original strand, 48834717 - 48834837
Alignment:
Q |
426 |
tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatattatcacgaattt |
525 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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T |
48834717 |
tttttatttctacgattatgcaataattaaattcattgtattcaaccaatcaatgagtaaatttcttataaatttcagctcatcatatcatcacgaattt |
48834816 |
T |
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Q |
526 |
gatatatttcagattgggaag |
546 |
Q |
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||||||||||||||||||||| |
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T |
48834817 |
gatatatttcagattgggaag |
48834837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 48835089 - 48835016
Alignment:
Q |
112 |
aacggttagattaaggagtagcacatattttatgatggtctgttcacaccatatattttccacacatcatcttc |
185 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
48835089 |
aacggttagattaaggagtagctcatattttatgatggtctgttcacaccatatattttccacacatcatcttc |
48835016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 49420160 - 49420197
Alignment:
Q |
132 |
gcacatattttatgatggtctgttcacaccatatattt |
169 |
Q |
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||||| ||||||||||||||||| |||||||||||||| |
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T |
49420160 |
gcacacattttatgatggtctgtccacaccatatattt |
49420197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 365
Target Start/End: Original strand, 35431508 - 35431678
Alignment:
Q |
193 |
ataaacatctcccctttcaatttaacacggttagctattatgttaaaagtacatcttcta----tctattgatgatgataatcttcatccaccaatccta |
288 |
Q |
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||||||| ||||||||||||||||||| |||| ||||| |||||| |||| ||| ||| ||| || | || ||||||||| ||||| || |||| |
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T |
35431508 |
ataaacacgtcccctttcaatttaacaccgttaactattctgttaagagtaaatcccctacttttctgtt--tcataataatcttcgtccactaaaccta |
35431605 |
T |
|
Q |
289 |
tatatttctgccattttattttaagctttcctttatttcaattatttcatatctcaattatcatagttcactgcttt |
365 |
Q |
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||| |||||||||||| | |||||||| || ||||| |||||||||| ||||||||||||||||||||||||||| |
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|
T |
35431606 |
tat--ttctgccatttt--tataagcttttctatatttaaattatttcaaatctcaattatcatagttcactgcttt |
35431678 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 365
Target Start/End: Complemental strand, 34607603 - 34607568
Alignment:
Q |
330 |
ttatttcatatctcaattatcatagttcactgcttt |
365 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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|
T |
34607603 |
ttatttcatatctcgattatcatagttcactgcttt |
34607568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 29647387 - 29647439
Alignment:
Q |
117 |
ttagattaaggagtagcacatattttatgatggtctgttcacaccatatattt |
169 |
Q |
|
|
||||||||| ||| ||||||||||||||||||| | | |||||||||||||| |
|
|
T |
29647387 |
ttagattaaagaggtgcacatattttatgatggtttctccacaccatatattt |
29647439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 35840515 - 35840465
Alignment:
Q |
119 |
agattaaggagtagcacatattttatgatggtctgttcacaccatatattt |
169 |
Q |
|
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||||||| ||| ||||| ||||||||||||||||| |||||||||||||| |
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|
T |
35840515 |
agattaaagaggtgcacacattttatgatggtctgtccacaccatatattt |
35840465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 5433681 - 5433644
Alignment:
Q |
117 |
ttagattaaggagtagcacatattttatgatggtctgt |
154 |
Q |
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||||||||| ||| |||||||||||||||||||||||| |
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T |
5433681 |
ttagattaaagaggagcacatattttatgatggtctgt |
5433644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 30545422 - 30545370
Alignment:
Q |
117 |
ttagattaaggagtagcacatattttatgatggtctgttcacaccatatattt |
169 |
Q |
|
|
||||||||| ||| ||||| ||||||||||||| ||| |||||||||||||| |
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|
T |
30545422 |
ttagattaaagaggtgcacacattttatgatggtttgtccacaccatatattt |
30545370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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