View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_high_21 (Length: 608)

Name: NF1390_high_21
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_high_21
NF1390_high_21
[»] chr6 (3 HSPs)
chr6 (297-522)||(1145496-1145722)
chr6 (138-301)||(1145292-1145455)
chr6 (29-142)||(1145132-1145245)
[»] chr1 (9 HSPs)
chr1 (138-273)||(18279422-18279557)
chr1 (36-142)||(8300513-8300621)
chr1 (29-135)||(18279614-18279720)
chr1 (29-141)||(8296936-8297042)
chr1 (138-202)||(8297090-8297154)
chr1 (138-274)||(8300668-8300804)
chr1 (356-517)||(27801441-27801597)
chr1 (356-517)||(30725023-30725180)
chr1 (456-520)||(41122148-41122211)
[»] chr8 (1 HSPs)
chr8 (356-522)||(13885347-13885509)
[»] chr7 (1 HSPs)
chr7 (423-520)||(48403090-48403187)
[»] chr3 (2 HSPs)
chr3 (456-520)||(37515849-37515913)
chr3 (456-520)||(36040944-36041008)
[»] chr5 (2 HSPs)
chr5 (423-510)||(11446689-11446777)
chr5 (420-508)||(35877687-35877774)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 3e-99; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 297 - 522
Target Start/End: Original strand, 1145496 - 1145722
Alignment:
Q  297 tgtcattctctcatgttagctatgcacaacgttccagacttctggtgtannnnnnnnn-ggtcttttatgatgcaatgaaagggcacaattgggaaatca 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  1145496 tgtcattctctcatgttagctatgcacaacgttccagacttctggtgtattttttttttggtcttttatgatgcaatgaaagggcacaattgggaaatca 1145595  T
Q  396 taaaaagatggaactttggcctgtttgtttcttcgctgttgtgcaaagattaaaaaacatgtgggccctacatgttttatctccctctcccctatttctc 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1145596 taaaaagatggaactttggcctgtttgtttcttcgctgttgtgcaaagattaaaaaacatgtgggccctacatattttatctccctctcccctatttctc 1145695  T
Q  496 accacaaccaaactagataaatgctta 522  Q
    ||||||||||||||||| |||||||||    
T  1145696 accacaaccaaactagagaaatgctta 1145722  T

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Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 138 - 301
Target Start/End: Original strand, 1145292 - 1145455
Alignment:
Q  138 ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaa 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1145292 ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaa 1145391  T
Q  238 tattatcaaacttagccacattgattatcatccatttgataaaaaaccaaaactgattgtgtca 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1145392 tattatcaaacttagccacattgattatcatccatttgataaaaaaccaaaactgattgtgtca 1145455  T

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Target: chr6; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 1145132 - 1145245
Alignment:
Q  29 acatcaagagcaaaattttcagaatattaaacagagtttttcatgcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagataaatc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  1145132 acatcaagagcaaaattttcagaatattaaacagagtttttcatgcttcaaactttgaaaatgaaattaaccaggcaagatattttactcgagataaatc 1145231  T
Q  129 cgcataaagctttc 142  Q
    ||||||||||||||    
T  1145232 cgcataaagctttc 1145245  T

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Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 138 - 273
Target Start/End: Complemental strand, 18279557 - 18279422
Alignment:
Q  138 ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaa 237  Q
    ||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |||  || || | |||||||||    
T  18279557 ctttctaagttcccttttaattccattctatcctccaaagacttaatagactcgagaaaattcagcgtaaagcttttgatatatccaatatacgtcaaaa 18279458  T
Q  238 tattatcaaacttagccacattgattatcatccatt 273  Q
    ||||||||||||| ||||||||||||||||||||||    
T  18279457 tattatcaaactttgccacattgattatcatccatt 18279422  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 8300513 - 8300621
Alignment:
Q  36 gagcaaaattttcagaatattaaa--cagagtttttcatgcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagataaatccgcat 133  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |    
T  8300513 gagcaaaattttcagaatattaaagacagagtttttcattcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagatagatctgcgt 8300612  T
Q  134 aaagctttc 142  Q
    |||| ||||    
T  8300613 aaagatttc 8300621  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 18279720 - 18279614
Alignment:
Q  29 acatcaagagcaaaattttcagaatattaaacagagtttttcatgcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagataaatc 128  Q
    |||||| |||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |     
T  18279720 acatcatgagcaatactttcagaatattaaagacagtttttcatgcttcaaactttgaaaatgaaattaacaagccaagaaattttactcgagataagta 18279621  T
Q  129 cgcataa 135  Q
    |||||||    
T  18279620 cgcataa 18279614  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 8296936 - 8297042
Alignment:
Q  29 acatcaagagcaaaattttcagaatattaaa--cagagtttttcatgcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagataaa 126  Q
    |||||| ||||| |||||||||||| |||||  |||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||    
T  8296936 acatcatgagcagaattttcagaatgttaaatacagagtttttcatgcttcaaact--------gaaattaacaaggcaagaaattttactagagataaa 8297027  T
Q  127 tccgcataaagcttt 141  Q
    |||||||||||||||    
T  8297028 tccgcataaagcttt 8297042  T

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Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 8297090 - 8297154
Alignment:
Q  138 ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcag 202  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  8297090 ctttctaagttcccttttaattccattctatcctccatagacttgatagactcgagaaaattcag 8297154  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 8300668 - 8300804
Alignment:
Q  138 ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaa 237  Q
    |||||| |||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||||| |||||| |||| |||  ||||||||||  ||||     
T  8300668 ctttctgagttcccttttaattccactctatcctccatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatctaacaaacagcaaag 8300767  T
Q  238 tattatcaaacttagccacattgattatcatccattt 274  Q
     |||||| |||  | |||| || ||||||||||||||    
T  8300768 aattatccaacacaaccaccttaattatcatccattt 8300804  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 356 - 517
Target Start/End: Complemental strand, 27801597 - 27801441
Alignment:
Q  356 gtcttttatgatgcaatgaaagggcacaattgggaaatcataaaaagatggaa-ctttggcctgtttgtttcttcgctgttgtgcaaagattaaaaaaca 454  Q
    |||||||||||||||||||||||| |||||||| |||| || |||| || ||| || | |||| |||    |||||||||||||   ||| ||||||  |    
T  27801597 gtcttttatgatgcaatgaaagggtacaattggaaaattattaaaaaattgaaactcttgcctattt----cttcgctgttgtgttgagactaaaaataa 27801502  T
Q  455 tgtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaat 517  Q
     ||||||||||||| |||||||||  |||||| ||||||||||||||||||||||||| ||||    
T  27801501 cgtgggccctacatattttatctc--tctcccttatttctcaccacaaccaaactagagaaat 27801441  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 356 - 517
Target Start/End: Original strand, 30725023 - 30725180
Alignment:
Q  356 gtcttttatgatgcaatgaaagggcacaattgggaaatcataaaaagatggaactttggcctgtttgtttcttcgctgttgtgcaaagattaaaaaacat 455  Q
    |||||||||||||||||||||||| |||||||| ||||  | ||||   | |||| | |||| |||    |||||||| ||||   ||| | ||||| |     
T  30725023 gtcttttatgatgcaatgaaagggtacaattggaaaattgttaaaaacggaaactcttgcctattt----cttcgctgctgtgaggagactgaaaaaaac 30725118  T
Q  456 gtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaat 517  Q
    ||||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  30725119 gtgggccctacatattttatctctctcccccatatttctcaccacaaccaaactagataaat 30725180  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 520
Target Start/End: Complemental strand, 41122211 - 41122148
Alignment:
Q  456 gtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaatgct 520  Q
    ||||| ||||||||| | | ||| ||||||||| ||||||||||||||||||| ||| |||||||    
T  41122211 gtgggacctacatgtctaaactctctctcccct-tttctcaccacaaccaaacaagagaaatgct 41122148  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 356 - 522
Target Start/End: Original strand, 13885347 - 13885509
Alignment:
Q  356 gtcttttatgatgcaatgaaagggcacaattgggaaatcataaaaagatggaactttggcctgtttgtttcttcgctgttgtgcaaagattaaaaaacat 455  Q
    ||||||||||||||  |||||||| | |||||  || | || |||| |||||||| |||||     |||||||||||| ||||| |||| | ||||||||    
T  13885347 gtcttttatgatgctgtgaaagggtagaattgtaaacttattaaaaaatggaactctggcc----agtttcttcgctgatgtgcgaagactgaaaaacat 13885442  T
Q  456 gtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaatgctta 522  Q
    |||||||||| |||||| ||||| |||| |||||||||||||| |||||||| |||| |||||||||    
T  13885443 gtgggccctatatgtttaatctctctcttccctatttctcaccgcaaccaaattagagaaatgctta 13885509  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 423 - 520
Target Start/End: Original strand, 48403090 - 48403187
Alignment:
Q  423 tttcttcgctgttgtgcaaagattaaaaaacatgtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaatgct 520  Q
    |||||||||| ||| |  |||| |||||||   ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  48403090 tttcttcgctattgagagaagactaaaaaagtagtgggccctacatgttttatctctctctcccttatttctcaccacaaccaaactagagaaatgct 48403187  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 456 - 520
Target Start/End: Original strand, 37515849 - 37515913
Alignment:
Q  456 gtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaatgct 520  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||    
T  37515849 gtgggccctacatgttttatctctctctcccttatttctcaccacaaccaaactaaagaaatgct 37515913  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 456 - 520
Target Start/End: Original strand, 36040944 - 36041008
Alignment:
Q  456 gtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaatgct 520  Q
    ||||||||||||||||||||||| |||| || ||||||||||||||||||||||| | |||||||    
T  36040944 gtgggccctacatgttttatctctctctaccttatttctcaccacaaccaaactaaagaaatgct 36041008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 510
Target Start/End: Complemental strand, 11446777 - 11446689
Alignment:
Q  423 tttcttcgctgttgtgcaaagattaaaaaacatgtgggccctacatgtt-ttatctccctctcccctatttctcaccacaaccaaacta 510  Q
    |||||||||| ||| |  |||| |||||||   |||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||||    
T  11446777 tttcttcgctattgagataagactaaaaaagcagtggaccctacatgttattatctctctctcccttatttctcaccacaaccaaacta 11446689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 508
Target Start/End: Original strand, 35877687 - 35877774
Alignment:
Q  420 ttgtttcttcgctgttgtgcaaagattaaaaaacatgtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaac 508  Q
    |||||||||||| | ||||   ||||||||||||| ||||| || |||  ||||| ||| |||| |||| |||||||||||||||||||    
T  35877687 ttgtttcttcgcagatgtgaggagattaaaaaaca-gtgggacccacaacttttaactctctcttccctctttctcaccacaaccaaac 35877774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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