View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_29 (Length: 527)
Name: NF1390_high_29
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 30 - 516
Target Start/End: Original strand, 25605346 - 25605832
Alignment:
| Q |
30 |
ccatttttaatgactacagctctgttgggtattcacttcttctcaagaaagaaaaggcaatcattgtgcagcccgatcgggttgtggttgctaatggacc |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25605346 |
ccatttttaatgactacagctctgttgggtattcacttcttctcaagaaagagaaggcaatcattgtgcagcccgatcgggttgtggttgctaatggacc |
25605445 |
T |
|
| Q |
130 |
tgcatttggatgcattttgatgaaggatttcctaaaggcacttgcaaagcgtctcaaacacaacaatgctgcatatgaaaattaccataggatatttgtc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25605446 |
tgcatttggatgcattttgatgaaggatttcctaaaggcacttgcaaagcgtctcaaacacaacaatgctgcatatgaaaattaccataggatatttgtc |
25605545 |
T |
|
| Q |
230 |
ccagatgggaaacctttgaagtcagcaccaaaagaacctttgagagttaatgttatgttccaacatatacaacagatgttatcgagggaaactgctgtga |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25605546 |
ccagatgggaaacctttgaagtcagcaccaaaagaacctttgagagttaatgttatgttccaacatatacaacagatgttgtcgagggaaactgctgtga |
25605645 |
T |
|
| Q |
330 |
ttgctgagacaggggactcatggtttaactgtcaaaaattgaaattgcccgagggatgtgggtaagtgttgagataatgtgatttgttgtattttcaaaa |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25605646 |
ttgctgagacaggggactcatggtttaactgtcaaaaattgaaattgcccgagggatgtgggtaagtgttgagataatgtgatttgttgtattttcaaca |
25605745 |
T |
|
| Q |
430 |
ataaatttcatgttgtttatagtgctgataaaatcttgttggcaggtatgagtttcaaatgcaatatggttcaattggatggtctgt |
516 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25605746 |
ataaatttcatgttgtttatagtgctgataaaaccttgttggcaggtatgagtttcaaatgcaatatggttcaattggatggtctgt |
25605832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 516
Target Start/End: Original strand, 25624978 - 25625473
Alignment:
| Q |
30 |
ccatttttaatgactacagctctgttgggtattcacttcttctcaagaaagaaaaggcaatcattgtgcagcccgatcgggttgtggttgctaatggacc |
129 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||| || || || ||||| ||||||||||||||||| || |||||||||| |
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| T |
25624978 |
ccatttttaacgactacagttctgttgggtattcacttcttctcaagaaagagaaagcgattattgttgagcccgatcgggttgtgattcctaatggacc |
25625077 |
T |
|
| Q |
130 |
tgcatttggatgcattttgatgaaggatttcctaaaggcacttgcaaagcgtctcaaacacaacaatgctgcatatgaaaattaccataggatatttgtc |
229 |
Q |
| |
|
|||||||||||| | |||||||| |||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
25625078 |
tgcatttggatgtgtgttgatgaatgatttccttaaggcacttgcgaagcatctcaaacacaacaatgttgcatatgaaaattaccataggatatttgtc |
25625177 |
T |
|
| Q |
230 |
ccagatgggaaacctttgaagtcagcaccaaaagaacctttgagagttaatgttatgttccaacatatacaacagatgttatcgagggaaactgctgtga |
329 |
Q |
| |
|
||| | || ||||||||||| || | ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || || ||||| | ||||| |
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| T |
25625178 |
ccaaacggaaaacctttgaaatctgagccaaaagaaccattgagagtcaatgttatgttccaacatatacaacaaatgttgtctagtgaaacagttgtga |
25625277 |
T |
|
| Q |
330 |
ttgctgagacaggggactcatggtttaactgtcaaaaattgaaattgcccgagggatgtgggtaagtgttgagataatgtgatttgttgtattttcaaa- |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| || ||| ||||||||||||||||| || |
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|
| T |
25625278 |
ttgctgagacaggggactcatggtttaactgccaaaagttgaaattaccggagggatgtgggtaagtgttatgagaatatgatttgttgtattttccaat |
25625377 |
T |
|
| Q |
429 |
--------aataaatttcatgttgtttatagtgctgataaaatcttgttggcaggtatgagtttcaaatgcaatatggttcaattggatggtctgt |
516 |
Q |
| |
|
| ||| || || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25625378 |
ttttcctcttttttttttattttttttattgtgctgataaaatcttgttgataggtatgagtttcaaatgcaatatggttcaattggatggtctgt |
25625473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 512
Target Start/End: Original strand, 25450966 - 25451038
Alignment:
| Q |
440 |
tgttgtttatagtgctgataaaatcttgttggcaggtatgagtttcaaatgcaatatggttcaattggatggt |
512 |
Q |
| |
|
|||||||| || || |||| | ||||||||| ||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
25450966 |
tgttgtttgtaatgttgattacatcttgttgatagggatgactttcaaatgcaatatggttcaattggatggt |
25451038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 25450834 - 25450872
Alignment:
| Q |
268 |
tttgagagttaatgttatgttccaacatatacaacagat |
306 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
25450834 |
tttgagggttaatgttatgttccaacatatacaaaagat |
25450872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 32 - 396
Target Start/End: Original strand, 20435427 - 20435791
Alignment:
| Q |
32 |
atttttaatgactacagctctgttgggtattcacttcttctcaagaaagaaaaggcaatcattgtgcagcccgatcgggttgtggttgctaatggacctg |
131 |
Q |
| |
|
||||| ||||| ||||| |||||||| || ||||||||| | ||||||||||| || || ||||| ||||| ||| |||||||| ||| ||||| ||| |
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|
| T |
20435427 |
attttcaatgattacagttctgttggatactcacttcttttgaagaaagaaaaagctattattgttcagcctgatagggttgtgattggaaatggtccta |
20435526 |
T |
|
| Q |
132 |
catttggatgcattttgatgaaggatttcctaaaggcacttgcaaagcgtctcaaacacaacaatgctgcatatgaaaattaccataggatatttgtccc |
231 |
Q |
| |
|
||||||| || | |||||||||||||| || | || || || |||||||| || |||||| |||| ||||| ||||| ||||| ||||| || |
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|
| T |
20435527 |
catttgggtgtgtcttgatgaaggattttcttagcgcgctcgcgaagcgtcttaagaggaacaatactgcttatgagaattatttcaggatttttgttcc |
20435626 |
T |
|
| Q |
232 |
agatgggaaacctttgaagtcagcaccaaaagaacctttgagagttaatgttatgttccaacatatacaacagatgttatcgagggaaactgctgtgatt |
331 |
Q |
| |
|
|| || || |||| || | ||| | ||| |||||||| ||||||||| | || |||||||| || | ||||| ||||| ||||||||||| ||| |
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|
| T |
20435627 |
tgaaggtttgccggtgaaatctgaacctagagagcctttgagggttaatgttctttttcaacatattcagaatatgttgtcgagtgaaactgctgttatt |
20435726 |
T |
|
| Q |
332 |
gctgagacaggggactcatggtttaactgtcaaaaattgaaattgcccgagggatgtgggtaagt |
396 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||| |||||||||| | ||||| |||||||| |
|
|
| T |
20435727 |
gccgagacaggggactcatggtttaactgccaaaagctgaaattgccaaaaggatgcgggtaagt |
20435791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 516
Target Start/End: Original strand, 20436012 - 20436052
Alignment:
| Q |
476 |
tatgagtttcaaatgcaatatggttcaattggatggtctgt |
516 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
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| T |
20436012 |
tatgagttccaaatgcaatatggttcaattggatggtctgt |
20436052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 516
Target Start/End: Original strand, 20438558 - 20438598
Alignment:
| Q |
476 |
tatgagtttcaaatgcaatatggttcaattggatggtctgt |
516 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
20438558 |
tatgagttccagatgcaatatggatcaattggatggtctgt |
20438598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 396
Target Start/End: Original strand, 5331524 - 5331888
Alignment:
| Q |
32 |
atttttaatgactacagctctgttgggtattcacttcttctcaagaaagaaaaggcaatcattgtgcagcccgatcgggttgtggttgctaatggacctg |
131 |
Q |
| |
|
||||| ||||||||||| |||||||| || || |||||| | ||||||||||| || || ||||| ||||| ||| |||||||| ||| ||||| || |
|
|
| T |
5331524 |
attttcaatgactacagttctgttggttactcgcttcttttgaagaaagaaaaagctataattgttcagcctgatagggttgtgattggaaatggtccaa |
5331623 |
T |
|
| Q |
132 |
catttggatgcattttgatgaaggatttcctaaaggcacttgcaaagcgtctcaaacacaacaatgctgcatatgaaaattaccataggatatttgtccc |
231 |
Q |
| |
|
||||||| || | |||||||||||||| || | || || || |||||||| || |||||| |||| ||||| ||||| ||||| ||||| || |
|
|
| T |
5331624 |
catttgggtgtgtcttgatgaaggattttcttagcgcgctcgcgaagcgtcttaagaggaacaatactgcttatgagaattatttcaggatttttgttcc |
5331723 |
T |
|
| Q |
232 |
agatgggaaacctttgaagtcagcaccaaaagaacctttgagagttaatgttatgttccaacatatacaacagatgttatcgagggaaactgctgtgatt |
331 |
Q |
| |
|
|| || || |||| || | ||| | ||| |||||||| ||||||||| | || |||||||| || | ||||| ||||| ||||||||||| ||| |
|
|
| T |
5331724 |
tgaaggtttgccggtgaaatctgaacctagagagcctttgagggttaatgttctttttcaacatattcagaatatgttgtcgagtgaaactgctgttatt |
5331823 |
T |
|
| Q |
332 |
gctgagacaggggactcatggtttaactgtcaaaaattgaaattgcccgagggatgtgggtaagt |
396 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||| |||||||||| | ||||| |||||||| |
|
|
| T |
5331824 |
gccgagacaggggactcatggtttaactgccaaaagctgaaattgccaaaaggatgcgggtaagt |
5331888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 516
Target Start/End: Original strand, 5332154 - 5332194
Alignment:
| Q |
476 |
tatgagtttcaaatgcaatatggttcaattggatggtctgt |
516 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5332154 |
tatgagttccaaatgcaatatggttcaattggatggtctgt |
5332194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 516
Target Start/End: Original strand, 5334178 - 5334218
Alignment:
| Q |
476 |
tatgagtttcaaatgcaatatggttcaattggatggtctgt |
516 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
5334178 |
tatgagttccagatgcaatatggatcaattggatggtctgt |
5334218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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