View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_31 (Length: 518)
Name: NF1390_high_31
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 168 - 508
Target Start/End: Original strand, 29368535 - 29368875
Alignment:
| Q |
168 |
ataaactccatatttaaatgttgggggtgctatcatgggcacatcacactaaaatgctaaaaagtgcggnnnnnnnnccctctacatctatatctgtaag |
267 |
Q |
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| T |
29368535 |
ataaactccatatttaaatggtgggggtgctatcatgggcacatccaactaaaatgctaaaaagtgcggaaaaaaaaccctctacatctatatctgtaag |
29368634 |
T |
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| Q |
268 |
ctgcacaacaggtgcctttgactaaattattaatatgccatgttgactcatattatttgtattgactgtaccattgttgaatcacataatttatcaatgc |
367 |
Q |
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| T |
29368635 |
ctgcacaacaggtgcctttgactaaattattaatatgccatgttgactcatattatttgtattgactgtaccattgttgaatcacataatttatcaatgc |
29368734 |
T |
|
| Q |
368 |
atatttcaatgcacgtactaatgtactgtcttgaatcacataattggtctcggcatttatcgaattccatattttcccactgttcattattttacttgtt |
467 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29368735 |
atatttcaatgcacgtattaatgtactgtcttgaatcacataattggtctcggcatttatcgaattccatattttcccactgttcattattttacttgtt |
29368834 |
T |
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| Q |
468 |
ttgttcttttctcgtattttatcagaatcccggaatctctg |
508 |
Q |
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| T |
29368835 |
ttgttcttttctcgtattttatcagaatcccggaatctctg |
29368875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 28210027 - 28210139
Alignment:
| Q |
30 |
agaggaatggctttggtggttgtggccagaaggcacttcgaaggctacacgacgacctgatttgcgacaactgttggtggatgaattcttcaccaacaca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28210027 |
agaggaatggctttggtggttgtggccagaaggcacttcgaaggctacacgacgacctgatttgcgacaactgttggtggatgaattcttcaccaacaca |
28210126 |
T |
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| Q |
130 |
ggtttgctctctg |
142 |
Q |
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||||||||||||| |
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| T |
28210127 |
ggtttgctctctg |
28210139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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