View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_35 (Length: 499)
Name: NF1390_high_35
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 40951320 - 40950884
Alignment:
| Q |
1 |
tttgaaattctctatagctatacataccaagcatcgctgtatataattcaaatctaaaagaagacctcacaaaattatagtccaatagaagatatagaag |
100 |
Q |
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| T |
40951320 |
tttgaaattctctatagctatgcataccaagcatcgctgtagataattcaaatccaaaagaagacctcacaaaattatagtccaatagaagatatagaag |
40951221 |
T |
|
| Q |
101 |
gttgtggtggctagttagtcctaccggttcttcataactttcttctgaattttacccaaattctgatttggttaggcacttagacagttatactggtcta |
200 |
Q |
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| T |
40951220 |
gttgtggtggctagttagtcctacaggttcttcataactttcttctgaattttacccaaattctgatttggttaggcacttagacagttatactggtcta |
40951121 |
T |
|
| Q |
201 |
ctaagaaaaatgtagagtttcttttattccccataaattcttaaaaaccgatcacatccagagatatagtttcagatggggaaaacactgatttgtctag |
300 |
Q |
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| T |
40951120 |
ctaagaaaaatgtagagtttcttttattccccataaattcttaaaaaccgatcacatccagagatatagtttcagatggggaaaacactgatttgtctag |
40951021 |
T |
|
| Q |
301 |
tttcatcaggtggaaaaatgtgtttttatcaactaagcaattgaactcaagtgatcaatgaactcaaccaaacgaaaaatcgtttgaaagaactcaaatt |
400 |
Q |
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| T |
40951020 |
tttcatcaggtggaaaaatgtgtttttatcaactaagcaattgaactcaagtgattaatgatctcaaccaaatgacaaatcgtttgaaagaactcaaatt |
40950921 |
T |
|
| Q |
401 |
caatttttagatgaaacaattgttggtcagactatat |
437 |
Q |
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| T |
40950920 |
caatttttggatgaaacaattgttggtcagactatat |
40950884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 436
Target Start/End: Complemental strand, 4669544 - 4669474
Alignment:
| Q |
366 |
aaccaaacgaaaaatcgtttgaaagaactcaaattcaatttttagatgaaacaattgttggtcagactata |
436 |
Q |
| |
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||||||| || ||||||||||||||||||| |||| ||||||| || ||||||| |||||| ||||||| |
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|
| T |
4669544 |
aaccaaatgataaatcgtttgaaagaactcgaatttaatttttgagtggaacaattattggtcggactata |
4669474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 14377696 - 14377754
Alignment:
| Q |
377 |
aaatcgtttgaaagaactcaaattcaatttttagatgaaacaattgttggtcagactat |
435 |
Q |
| |
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|||||||| | |||||||||| |||||||||| | || ||||||| ||||||||||||| |
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| T |
14377696 |
aaatcgttcggaagaactcaagttcaatttttgggtggaacaattcttggtcagactat |
14377754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 405
Target Start/End: Complemental strand, 42494337 - 42494268
Alignment:
| Q |
336 |
agcaattgaactcaagtgatcaatgaactcaaccaaacgaaaaatcgtttgaaagaactcaaattcaatt |
405 |
Q |
| |
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|||||||||| ||||||| | |||||||| || ||| || ||||||||| ||||||||||| ||||||| |
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| T |
42494337 |
agcaattgaaatcaagtggttaatgaacttaattaaatgacaaatcgtttaaaagaactcaagttcaatt |
42494268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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