View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_44 (Length: 464)
Name: NF1390_high_44
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 56 - 453
Target Start/End: Original strand, 32801112 - 32801509
Alignment:
| Q |
56 |
caaaaacaacagacttctaatacaatttttggaaaagaaaaatgaaagaaacaaacatcattcactgctatgagacgcataagcatattcttaatttcat |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32801112 |
caaaaacaacagacttctaatacaatttttggaaaagaaaaatgaaagaaacaaacatcattcactgctatgagacacataagcatattcttaatttcat |
32801211 |
T |
|
| Q |
156 |
tcaagtccggaaatcctcctgaaatgaaggacaaactggtaaaccttttcagggtcaggaagaactttcttgacagattctctttgcaagctcctcttaa |
255 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32801212 |
tcaagtccggaaatcttcctgaaatgaaggacaaactggtaaaccttttcagggtcaggaagaactttcttgacagattctctttgcaagctcctcttaa |
32801311 |
T |
|
| Q |
256 |
tccaagctgagatttttggggagtgatcttcaactttgaaattaccaagtttctcgtatgctgagaaccatgcagaatgaggaatggctatgatatctac |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32801312 |
tccaagctgagatttttggggagtgatcttcaactttgaaattaccaagtttctcatatgctaagaaccatgcagaatgaggaatggctatgatatctac |
32801411 |
T |
|
| Q |
356 |
ataaccaaagacatcaccaccaaagtagtctttctctccaagagcttcttccagatgctttaaaacttcaatgaagtcccgtgttccgacttctctct |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32801412 |
ataaccaaagacatcaccaccaaagtagtctttctctccaagagcttcttccagatgctttaaaacttcaatgaagtcccgtgttccgacttctctct |
32801509 |
T |
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