View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_high_46 (Length: 459)

Name: NF1390_high_46
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_high_46
NF1390_high_46
[»] chr7 (2 HSPs)
chr7 (94-455)||(33274034-33274395)
chr7 (94-252)||(3160218-3160376)
[»] chr6 (3 HSPs)
chr6 (94-325)||(10029925-10030156)
chr6 (94-222)||(4038686-4038814)
chr6 (160-224)||(10554660-10554724)
[»] chr8 (2 HSPs)
chr8 (96-222)||(12508608-12508734)
chr8 (94-222)||(35665877-35666005)
[»] chr4 (5 HSPs)
chr4 (173-219)||(2428679-2428725)
chr4 (107-223)||(32072592-32072708)
chr4 (107-145)||(46024060-46024098)
chr4 (107-145)||(46265269-46265307)
chr4 (165-222)||(47101350-47101407)
[»] chr2 (2 HSPs)
chr2 (176-214)||(15403650-15403688)
chr2 (173-219)||(44648686-44648732)
[»] chr3 (1 HSPs)
chr3 (173-222)||(43490075-43490124)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 94 - 455
Target Start/End: Complemental strand, 33274395 - 33274034
Alignment:
Q  94 tgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgag 193  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33274395 tgttggtgttaggcaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgag 33274296  T
Q  194 gaagcagctagagcttatgatgaagctgcatgccttcttcgaggttcgaacactcgaaccaacttcatcactcatgtctcattggattctcctcttgctt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33274295 gaagcagctagagcttatgatgaagctgcatgccttcttcgaggttcgaacactcgaaccaacttcatcactcatgtctcattggattctcctcttgctt 33274196  T
Q  294 ccaggataagaaatcttcttaacaacagaaaaggcgacaaaaaacaggaagatggcgctgttgcttctgctccaagtaacagcaaaactaccattagtaa 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33274195 ccaggataagaaatcttcttaacaacagaaaaggcgacaaaaaacaggaagatggtgctgttgcttctgctccaagtaacagcaaaactaccattagtaa 33274096  T
Q  394 tactagtacaattacaagcaatgatgataacaaggagagcactctttcgacctatgctactc 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33274095 tactagtacaattacaagcaatgatgataacaaggagagcactctttcgacctgtgctactc 33274034  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 94 - 252
Target Start/End: Original strand, 3160218 - 3160376
Alignment:
Q  94 tgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgag 193  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || | ||||||||||||| | ||| | ||||| ||||| ||||||||     
T  3160218 tgttggtgtgagacaaaggccatcaggaagatgggtagctgagataaaagataccattcagaagataagagtttggttaggaacttttgatacagctgaa 3160317  T
Q  194 gaagcagctagagcttatgatgaagctgcatgccttcttcgaggttcgaacactcgaac 252  Q
    ||||| || ||||| |||||||||||||||||  | ||||| ||||| |||||| ||||    
T  3160318 gaagctgcaagagcctatgatgaagctgcatgtatacttcgcggttccaacactagaac 3160376  T

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Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 94 - 325
Target Start/End: Original strand, 10029925 - 10030156
Alignment:
Q  94 tgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgag 193  Q
    |||||| || |||||||| |||||||| ||||  || |||||||| || |||||||| || || |||||||||||||||||||||||||| |||||||||    
T  10029925 tgttggggtgagacaaagaccatcaggtagatatgttgctgagataaaggacacaacacaaaacataagaatgtggcttggaacatttgaaacagctgag 10030024  T
Q  194 gaagcagctagagcttatgatgaagctgcatgccttcttcgaggttcgaacactcgaaccaacttcatcactcatgtctcattggattctcctcttgctt 293  Q
    |||||||| ||||||||||||||||| ||    |||||||| ||||| || ||||| ||||||||| |||| ||||| || |  ||||| ||||| ||||    
T  10030025 gaagcagcaagagcttatgatgaagccgcgacacttcttcgcggttccaaaactcgtaccaacttcgtcacacatgtttcttatgattcccctctcgctt 10030124  T
Q  294 ccaggataagaaatcttcttaacaacagaaaa 325  Q
    |  ||||  || ||||||| |||||| |||||    
T  10030125 ctcggattcgacatcttctcaacaaccgaaaa 10030156  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 4038686 - 4038814
Alignment:
Q  94 tgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgag 193  Q
    |||||| ||| ||||||||||||| || |||||||| |||||||| ||||| || | ||| ||||||||| | ||| | ||||| ||||| ||||||||     
T  4038686 tgttggcgttcgacaaaggccatcgggtagatgggttgctgagattaaagataccattcaaaagataagagtttggttaggaacttttgatacagctgaa 4038785  T
Q  194 gaagcagctagagcttatgatgaagctgc 222  Q
    ||||| ||||||||||||||||| |||||    
T  4038786 gaagctgctagagcttatgatgaggctgc 4038814  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 10554660 - 10554724
Alignment:
Q  160 aagaatgtggcttggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgcat 224  Q
    |||| |||||||||| || ||||| |||||||| |  |||||||  |||||||||||||||||||    
T  10554660 aagagtgtggcttggcacctttgaaacagctgaagctgcagctactgcttatgatgaagctgcat 10554724  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 12508734 - 12508608
Alignment:
Q  96 ttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgagga 195  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||  |  ||||| | ||||||||||| | ||| ||| | || ||    
T  12508734 ttggtgtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaaga 12508635  T
Q  196 agcagctagagcttatgatgaagctgc 222  Q
    ||| ||| ||||||| || ||||||||    
T  12508634 agctgctcgagcttacgacgaagctgc 12508608  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 35665877 - 35666005
Alignment:
Q  94 tgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgag 193  Q
    |||||| || ||||||||  | ||||| | ||||| ||| ||||| ||||||||| |  |||| || || ||||||||||| || | | | || ||||||    
T  35665877 tgttggagtgagacaaagagcttcaggaaaatgggcagcagagataaaagacacatcaaagaacattaggatgtggcttggtacctataaaactgctgag 35665976  T
Q  194 gaagcagctagagcttatgatgaagctgc 222  Q
    ||||| ||| ||||||| |||||||||||    
T  35665977 gaagctgctcgagcttacgatgaagctgc 35666005  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 2428725 - 2428679
Alignment:
Q  173 ggaacatttgagacagctgaggaagcagctagagcttatgatgaagc 219  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||    
T  2428725 ggaacatttgagacagctgaagaagcagctagagcatatgatgaagc 2428679  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 32072592 - 32072708
Alignment:
Q  107 caaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgaggaagcagctagag 206  Q
    ||||| || |||||||||||||| ||||||||||||||||| |  ||||| |||||| ||||| | || || | ||| || | ||| || || |||||||    
T  32072592 caaagaccttcagggagatgggtggctgagatcaaagacaccatacagaacataagattgtggttggggacctatgacactggtgaagaggctgctagag 32072691  T
Q  207 cttatgatgaagctgca 223  Q
    |||||||||| ||||||    
T  32072692 cttatgatgaggctgca 32072708  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 46024060 - 46024098
Alignment:
Q  107 caaaggccatcagggagatgggtagctgagatcaaagac 145  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  46024060 caaaggccatcaggaagatggatagctgagatcaaagac 46024098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 46265307 - 46265269
Alignment:
Q  107 caaaggccatcagggagatgggtagctgagatcaaagac 145  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  46265307 caaaggccatcaggaagatggatagctgagatcaaagac 46265269  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 47101407 - 47101350
Alignment:
Q  165 tgtggcttggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgc 222  Q
    ||||||| ||||||||||| ||||| || |||||||| ||||| |||||| |||||||    
T  47101407 tgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgc 47101350  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 15403650 - 15403688
Alignment:
Q  176 acatttgagacagctgaggaagcagctagagcttatgat 214  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  15403650 acatttgacacagctgaagaagcagctagagcttatgat 15403688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 44648732 - 44648686
Alignment:
Q  173 ggaacatttgagacagctgaggaagcagctagagcttatgatgaagc 219  Q
    ||||||||||| |||||||| |||||||||| ||| |||||||||||    
T  44648732 ggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 44648686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 43490124 - 43490075
Alignment:
Q  173 ggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgc 222  Q
    ||||||||||| |||||||| | ||| |||||||| ||||||||||||||    
T  43490124 ggaacatttgaaacagctgaagcagctgctagagcatatgatgaagctgc 43490075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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