View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390_high_50 (Length: 451)
Name: NF1390_high_50
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1390_high_50 |
| |
|
[»] scaffold0172 (1 HSPs) |
| | |
|
[»] scaffold0633 (1 HSPs) |
| | |
|
[»] scaffold0027 (1 HSPs) |
| | |
|
[»] scaffold0009 (1 HSPs) |
| | |
|
[»] scaffold0246 (1 HSPs) |
| | |
|
[»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 21)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 134 - 441
Target Start/End: Complemental strand, 46896138 - 46895827
Alignment:
Q |
134 |
tttttggaaggagccttaaataaaatagtcgtcgccatgttgtcaactaagcatatttgtatattggaaaatgttaaggagttttctaaggtcattcttt |
233 |
Q |
|
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |
|
|
T |
46896138 |
tttttggaaggagctttaaataaaatagtcgtcgctatgttgtcaactaagcatatttgtatattgggaaatgttaatgagttttttaaggtcattcttt |
46896039 |
T |
|
Q |
234 |
acggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaat |
333 |
Q |
|
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
46896038 |
acggactttagatagtaagtttttatagaaatttatgcattcaatgcatcggaaattgaaatattagactttttcaataaataatttcttaatttagaat |
46895939 |
T |
|
Q |
334 |
ccttaac-agtaccttaagaacacctattaac---aaaacccttgtatatttcattgtcgctttgtaatcaatgnnnnnnntaaggcttaattgcagttt |
429 |
Q |
|
|
| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
T |
46895938 |
ctttaacaagtaccttaggaacacctattaacaaaaaaacccttgtatatttcattgtcgctttgtaatcaacgaaaaaaataaggcttaattgcagttt |
46895839 |
T |
|
Q |
430 |
tgaccccctatg |
441 |
Q |
|
|
|| ||||||||| |
|
|
T |
46895838 |
tggccccctatg |
46895827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 19547034 - 19547154
Alignment:
Q |
219 |
ctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataat |
318 |
Q |
|
|
|||||| || |||||| |||||||| ||||||||||||||| |||| || ||||||||||| ||||| ||||||| |||| ||| |||||||| |||||| |
|
|
T |
19547034 |
ctaagggcactctttaaggactttatatagtaagtttttatagaaacttgtgcattcaatgcatcgggaattgaagtattggacattttcaatgaataat |
19547133 |
T |
|
Q |
319 |
ttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||| || |||||||||| |
|
|
T |
19547134 |
ttcttacttgggaatccttaa |
19547154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 34582756 - 34582657
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt |
337 |
Q |
|
|
|||||||||||||||||||||| ||| |||||||||||||| ||| ||||||||| |||| ||||||||| | |||||||| |||||||| ||||||| |
|
|
T |
34582756 |
actttagatagtaagtttttatgaaaacttatgcattcaatgcatcagaaattgaagcattatactttttcattgaataattttttaatttaaaatcctt |
34582657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 253 - 339
Target Start/End: Complemental strand, 18032276 - 18032190
Alignment:
Q |
253 |
tttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
||||||| |||| ||||||||| |||| ||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||| |
|
|
T |
18032276 |
tttttatggaaacttatgcatttaatgcatcggaaattgaagcattaaactttttcaataaataatttcttaattcagaatctttaa |
18032190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 327
Target Start/End: Complemental strand, 14758697 - 14758572
Alignment:
Q |
202 |
aaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga |
301 |
Q |
|
|
||||||||| |||| ||||||| || |||||| |||||||| ||||||| ||||||| ||| || ||||||||||| |||| |||||||||| ||| | |
|
|
T |
14758697 |
aaatgttaacgagtgctctaaggacactctttaaggactttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa |
14758598 |
T |
|
Q |
302 |
ctttttcaataaataatttcttaatt |
327 |
Q |
|
|
|||||| || ||||||||||||||| |
|
|
T |
14758597 |
cttttttaaggaataatttcttaatt |
14758572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 44584056 - 44584155
Alignment:
Q |
240 |
tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||||||||||||||||| ||| || |||||| ||| || | ||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
T |
44584056 |
tttagatagtaagtttttatgaaaacttgtgcatttaatacattgaaaattgaaacattagactttttcaacaaatagtttcttaatttagattccttaa |
44584155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 327
Target Start/End: Complemental strand, 26297820 - 26297716
Alignment:
Q |
226 |
cattctttacggactttagatagtaagtttttattgaaatttatgca---ttcaatggatcggaaattgaaatattagactttttcaataaataatttct |
322 |
Q |
|
|
||||||||| |||||||||||||||||||||||| |||| || |||| ||| ||| ||||||||||||||||||| |||||||||| |||| |||| |
|
|
T |
26297820 |
cattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaatgaatagtttca |
26297721 |
T |
|
Q |
323 |
taatt |
327 |
Q |
|
|
||||| |
|
|
T |
26297720 |
taatt |
26297716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 26766063 - 26765978
Alignment:
Q |
231 |
tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaata |
316 |
Q |
|
|
|||| |||||||||||||||||||| ||| ||| ||||||||||||| ||| ||||||||||||||| ||||||||||| |||| |
|
|
T |
26766063 |
tttaaggactttagatagtaagtttatataaaaacttatgcattcaatccatcagaaattgaaatattaaactttttcaatgaata |
26765978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 38294110 - 38294014
Alignment:
Q |
239 |
ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaata-ttagactttttcaataaataatttcttaatttagaatc |
334 |
Q |
|
|
||||| ||||||||||||||| |||| || ||||||||||| || ||||||| ||||| ||| |||||||| || || ||||||||||||||||||| |
|
|
T |
38294110 |
ctttaaatagtaagtttttatagaaacttgtgcattcaatgcattggaaattaaaatatttatactttttctatgaacaatttcttaatttagaatc |
38294014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 14890492 - 14890590
Alignment:
Q |
240 |
tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||||||||| ||| || ||||||| ||||||||||| ||||||||||||| ||||| ||||||||| |||||||| |||||| ||||||||||| |
|
|
T |
14890492 |
tttagatagtaaatttg-atagaaatttgtgcattcaatgtatcggaaattgaagtattaagttttttcaattaataattttttaattaagaatccttaa |
14890590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 327
Target Start/End: Complemental strand, 30529468 - 30529367
Alignment:
Q |
226 |
cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa |
325 |
Q |
|
|
||||||||| |||||||| ||||||| ||||||| |||| || |||||| |||| ||| ||||||||| | ||| | |||||||| ||||||||||||| |
|
|
T |
30529468 |
cattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcagaaattgaagtgttaaattttttcaaagaataatttcttaa |
30529369 |
T |
|
Q |
326 |
tt |
327 |
Q |
|
|
|| |
|
|
T |
30529368 |
tt |
30529367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 339
Target Start/End: Complemental strand, 44920356 - 44920219
Alignment:
Q |
202 |
aaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga |
301 |
Q |
|
|
||||||||| |||| |||||| || | |||| |||||| | ||||||| ||||||| |||| || ||||||||||| ||| |||||||| | ||| | |
|
|
T |
44920356 |
aaatgttaacgagtgccctaagggcactttttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatgcatcataaattgaagtgttaaa |
44920257 |
T |
|
Q |
302 |
ctttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||| ||| ||||||||||||||| |||| |||||| |
|
|
T |
44920256 |
cttttttaatgaataatttcttaattgagaaaccttaa |
44920219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 14892041 - 14892139
Alignment:
Q |
240 |
tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||||||||| ||| || ||||||| || |||||||| ||||||||||||| ||||| ||||||||| |||||||| |||||| ||||||||||| |
|
|
T |
14892041 |
tttagatagtaaatttg-atagaaatttgtgtattcaatgtatcggaaattgaagtattaagttttttcaattaataattttttaattaagaatccttaa |
14892139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 18038996 - 18038894
Alignment:
Q |
237 |
gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct |
336 |
Q |
|
|
||||||||||| ||| ||||||| |||||| || |||||||| ||||||||||||| |||||| ||||||||| || |||||||||| ||||| || |
|
|
T |
18038996 |
gactttagataataattttttatgaaaatttgtgtattcaatgcatcggaaattgaagcattagattttttcaatgcattgtttcttaattcagaatact |
18038897 |
T |
|
Q |
337 |
taa |
339 |
Q |
|
|
||| |
|
|
T |
18038896 |
taa |
18038894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 41649981 - 41649899
Alignment:
Q |
245 |
atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
||||||| ||||||| |||| |||||||||||||| || |||||||||||| ||| ||||||| || |||||||| |||||| |
|
|
T |
41649981 |
atagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaatt |
41649899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 9500924 - 9500969
Alignment:
Q |
286 |
aaattgaaatattagactttttcaataaataatttcttaatttaga |
331 |
Q |
|
|
|||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
T |
9500924 |
aaattgaagtattagactttttcaataaatagtttcttaatttaga |
9500969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 26533765 - 26533821
Alignment:
Q |
283 |
cggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |
|
|
T |
26533765 |
cggaaattgaaacgttagactttttcaattgataatttcttaattgagaatccttaa |
26533821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 6983018 - 6983095
Alignment:
Q |
262 |
aaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
||||||||| || ||||| || | ||||||||||||| |||| ||| ||| |||||||||||||||| |||| ||||| |
|
|
T |
6983018 |
aaatttatgtatccaatgcattgaaaattgaaatatttgactcttttaatgaataatttcttaatttggaatacttaa |
6983095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 25095675 - 25095610
Alignment:
Q |
274 |
tcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||| |||| ||||||||||||| |||||||| | |||||||||||| |||||||||||||| |
|
|
T |
25095675 |
tcaatgcatcgaaaattgaaatatttgacttttttatgaaataatttcttcttttagaatccttaa |
25095610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 46729283 - 46729219
Alignment:
Q |
229 |
tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaa |
293 |
Q |
|
|
|||||| |||||||| ||||||| ||||||| |||| || ||||||||||| ||||||| ||||| |
|
|
T |
46729283 |
tctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatgcatcggaatttgaa |
46729219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 36331618 - 36331687
Alignment:
Q |
270 |
gcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||||||| || | |||||||| |||| |||||||||||||| | |||||||||| |||||||||| |
|
|
T |
36331618 |
gcattcaatgaattgaaaattgaattatttaactttttcaataaacattttcttaattaggaatccttaa |
36331687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 219 - 336
Target Start/End: Complemental strand, 11010365 - 11010248
Alignment:
Q |
219 |
ctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataat |
318 |
Q |
|
|
|||||| |||| |||| |||||| |||||||| |||||||| |||| || || |||||||| ||| ||||||||| ||||||||||||||||| |||| | |
|
|
T |
11010365 |
ctaagggcattttttaaggacttcagatagtatgtttttatggaaagttgtgtattcaatgcatcagaaattgaagtattagactttttcaatgaatagt |
11010266 |
T |
|
Q |
319 |
ttcttaatttagaatcct |
336 |
Q |
|
|
|||||||||||||||||| |
|
|
T |
11010265 |
ttcttaatttagaatcct |
11010248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 40944271 - 40944369
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct |
336 |
Q |
|
|
|||||||||||||| ||||||| ||||||| | ||||||||| |||| |||||||| |||| ||||||||||| |||||||||||||||||||||||| |
|
|
T |
40944271 |
actttagatagtaaatttttatggaaatttgtacattcaatgcatcgaaaattgaagcattatactttttcaatgaataatttcttaatttagaatcct |
40944369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 332
Target Start/End: Complemental strand, 42877385 - 42877252
Alignment:
Q |
199 |
ggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatatt |
298 |
Q |
|
|
|||||||||||| |||| |||||||| || |||||| ||||||| ||||||| ||||||| |||| || || ||||||| || | |||||||||| || |
|
|
T |
42877385 |
ggaaaatgttaacgagtattctaagggcactctttaaagactttaaatagtaaatttttatggaaaattgtgtattcaatacattgaaaattgaaatttt |
42877286 |
T |
|
Q |
299 |
agactttttcaataaataatttcttaatttagaa |
332 |
Q |
|
|
| ||||||| || |||||||||| |||| |||| |
|
|
T |
42877285 |
aaacttttttcatgaataatttctcaattgagaa |
42877252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 248447 - 248567
Alignment:
Q |
220 |
taaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagac-tttttcaataaataat |
318 |
Q |
|
|
||||| || |||||| |||||| | ||||||| ||||||| |||| || |||||||||| ||||||||||||| | ||| || ||||| || ||||||| |
|
|
T |
248447 |
taagggcactctttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatacatcggaaattgaagtgttaaacttttttaaagaaataat |
248546 |
T |
|
Q |
319 |
ttcttaatttagaatccttaa |
339 |
Q |
|
|
||||||||| |||| |||||| |
|
|
T |
248547 |
ttcttaattgagaaaccttaa |
248567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 18988862 - 18988786
Alignment:
Q |
231 |
tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagacttttt |
307 |
Q |
|
|
|||| |||| ||||||||||| ||||||| ||| |||||||||||||| || ||||||| || ||||||||||||| |
|
|
T |
18988862 |
tttaaggacattagatagtaaatttttatgaaaacttatgcattcaatgcattggaaatttaagtattagacttttt |
18988786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 22528740 - 22528821
Alignment:
Q |
243 |
agatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttctta |
324 |
Q |
|
|
|||| |||| ||||||| ||||||||| ||| |||| ||||||||||||| || | ||||||||||| |||||||||||| |
|
|
T |
22528740 |
agattgtaaatttttatgaaaatttatgtatttaatgtatcggaaattgaagcatcaaactttttcaatgaataatttctta |
22528821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 325
Target Start/End: Complemental strand, 16980876 - 16980752
Alignment:
Q |
202 |
aaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga |
301 |
Q |
|
|
||||| ||| |||| | |||||| || |||||| ||||||| |||||| ||||||| ||| |||| ||||||||| ||||||||||||| | ||| | |
|
|
T |
16980876 |
aaatgctaacgagtatcctaaggacactctttaaagactttaaatagtacatttttatgaaaaattatacattcaatgtatcggaaattgaagtgttaaa |
16980777 |
T |
|
Q |
302 |
ctttttcaata-aataatttcttaa |
325 |
Q |
|
|
|||| |||| | ||||||||||||| |
|
|
T |
16980776 |
ctttctcaaaagaataatttcttaa |
16980752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 26663691 - 26663636
Alignment:
Q |
284 |
ggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||| |||||||| |||||||| || ||||||||||||| |||||||| ||||| |
|
|
T |
26663691 |
ggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaa |
26663636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 26935286 - 26935231
Alignment:
Q |
284 |
ggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||| |||||||| |||||||| || ||||||||||||| |||||||| ||||| |
|
|
T |
26935286 |
ggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaa |
26935231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 35947745 - 35947644
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt |
337 |
Q |
|
|
|||||| |||||||| ||||| ||||||| || |||| ||| |||| |||||||||||||| |||| |||| |||| |||||| ||| || |||||| |
|
|
T |
35947745 |
actttaaatagtaagggtttatagaaatttgtgaattctatgcatcgaaaattgaaatattaagtttttccaatgaatagtttcttgattgagtatcctt |
35947646 |
T |
|
Q |
338 |
aa |
339 |
Q |
|
|
|| |
|
|
T |
35947645 |
aa |
35947644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 42265538 - 42265437
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt |
337 |
Q |
|
|
|||||| ||||||||||||| | || |||||| | |||||| || | |||||||||| || |||||||| || |||||||| || ||| ||||||||| |
|
|
T |
42265538 |
actttatatagtaagtttttgtctaagtttatgaaatcaatgcattgaaaattgaaatttttgacttttttaaagaataatttttttattaagaatcctt |
42265439 |
T |
|
Q |
338 |
aa |
339 |
Q |
|
|
|| |
|
|
T |
42265438 |
aa |
42265437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 4857329 - 4857273
Alignment:
Q |
271 |
cattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
||||||||| |||| ||||| |||| ||| |||||||||| ||||||||||||||| |
|
|
T |
4857329 |
cattcaatgtatcgaaaattaaaatgttaaactttttcaaagaataatttcttaatt |
4857273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 14328455 - 14328503
Alignment:
Q |
250 |
aagtttttattgaaatttatgcattcaatggatcggaaattgaaatatt |
298 |
Q |
|
|
|||||||||| |||||||||||||||||| |||| |||||||| |||| |
|
|
T |
14328455 |
aagtttttataaaaatttatgcattcaatgaatcgaaaattgaattatt |
14328503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 15206500 - 15206568
Alignment:
Q |
239 |
ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagacttttt |
307 |
Q |
|
|
||||| ||| ||| ||||||| |||||| ||||||||||| |||| |||||||| |||| |||||||| |
|
|
T |
15206500 |
ctttaaataataattttttatgaaaatttgtgcattcaatgaatcgaaaattgaagtattggacttttt |
15206568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 332
Target Start/End: Original strand, 21813119 - 21813254
Alignment:
Q |
197 |
ttggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaata |
296 |
Q |
|
|
|||||||||||||| |||| | |||||| || |||||| ||| |||| ||||||| ||||||| |||| |||||||||||||| ||||||| || || | |
|
|
T |
21813119 |
ttggaaaatgttaatgagtgtcctaagggcactctttaaggattttaaatagtaaatttttatggaaaattatgcattcaatgcatcggaatttaaagtg |
21813218 |
T |
|
Q |
297 |
ttagactttttcaataaataatttcttaatttagaa |
332 |
Q |
|
|
||| ||||||||||| ||||||||||||||| |||| |
|
|
T |
21813219 |
ttaaactttttcaatgaataatttcttaattgagaa |
21813254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 29212803 - 29212701
Alignment:
Q |
237 |
gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct |
336 |
Q |
|
|
||||||||||| ||| ||||||| |||| || |||||||||| ||| |||||||| |||||||||||||||| |||| |||||||||||| |||||| |
|
|
T |
29212803 |
gactttagatattaaatttttatagaaacttgtgcattcaatacatcataaattgaagcattagactttttcaatgaatagtttcttaatttaaaatcct |
29212704 |
T |
|
Q |
337 |
taa |
339 |
Q |
|
|
||| |
|
|
T |
29212703 |
taa |
29212701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 36494273 - 36494176
Alignment:
Q |
243 |
agatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga-ctttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
||||||||||||||||| |||| || |||||||||| || |||||||||| ||||||| ||||||||| |||| |||||||||| |||||||||| |
|
|
T |
36494273 |
agatagtaagtttttatggaaacttgtgcattcaatacattggaaattgaagtattagatttttttcaatgaatagtttcttaattgggaatccttaa |
36494176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 339
Target Start/End: Complemental strand, 40629214 - 40629093
Alignment:
Q |
218 |
tctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataa |
317 |
Q |
|
|
||||||| ||||||||| |||||||||| |||| |||||| ||| || |||||| |||| ||| |||||| || |||||| |||||||||||||| |
|
|
T |
40629214 |
tctaagggcattctttaaaaactttagataataagattttataaaaacttgtgcatttaatgtatcagaaattagaacattagattttttcaataaatat |
40629115 |
T |
|
Q |
318 |
tttcttaatttagaatccttaa |
339 |
Q |
|
|
||| |||||| ||||||||||| |
|
|
T |
40629114 |
ttttttaattgagaatccttaa |
40629093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 49682276 - 49682180
Alignment:
Q |
231 |
tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
|||| |||||||| ||||||| ||||||| |||| || ||||||||||| |||||||||||||| ||| ||||||| || |||||||| |||||| |
|
|
T |
49682276 |
tttaaggactttaaatagtaaatttttatagaaaattgtgcattcaatgcttcggaaattgaaatgttaaacttttttaaggaataattttttaatt |
49682180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 32606385 - 32606475
Alignment:
Q |
237 |
gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
||||||| ||| ||| ||||||| ||| |||||||||||||| ||||||||||||||| ||| |||||||| | ||||||| |||||| |
|
|
T |
32606385 |
gactttaaataataaatttttatgaaaaattatgcattcaatgcatcggaaattgaaatgttaacttttttcaaaatataattttttaatt |
32606475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 7278169 - 7278270
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt |
337 |
Q |
|
|
|||||| ||||||||||||||| |||| || |||||| |||| || |||||| ||||||||| ||||| ||| |||| |||| ||||| || |||||| |
|
|
T |
7278169 |
actttaaatagtaagtttttatcgaaacttgtgcattgaatgcattggaaatcgaaatattaagcttttctaatgaatagtttcgtaattgagtatcctt |
7278268 |
T |
|
Q |
338 |
aa |
339 |
Q |
|
|
|| |
|
|
T |
7278269 |
aa |
7278270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 39145054 - 39144981
Alignment:
Q |
254 |
ttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
|||||| |||| |||||||||||||| ||||||||||||| | ||| | ||||| || ||| |||||||||||| |
|
|
T |
39145054 |
ttttatagaaaattatgcattcaatgcatcggaaattgaagtgttaaaattttttaaaaaacaatttcttaatt |
39144981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 3383427 - 3383356
Alignment:
Q |
249 |
taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataattt |
320 |
Q |
|
|
|||| |||||||||||||||| |||||||| ||| ||||||||| |||| |||||||| ||| || ||||| |
|
|
T |
3383427 |
taagattttattgaaatttatatattcaatgtatcagaaattgaagtatttgacttttttaatgaacaattt |
3383356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 46895927 - 46896002
Alignment:
Q |
245 |
atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataattt |
320 |
Q |
|
|
||||||||||||||| |||||||||||||||||| ||| |||||||| | || |||||||| |||||||||| |
|
|
T |
46895927 |
atagtaagtttttataaaaatttatgcattcaatgcatcaaaaattgaagtctttaactttttctttaaataattt |
46896002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 53040525 - 53040470
Alignment:
Q |
284 |
ggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||||||| |||| || ||||| || ||||||||||||||||||||||||||| |
|
|
T |
53040525 |
ggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttaa |
53040470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 31294441 - 31294383
Alignment:
Q |
269 |
tgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
||||||||||| |||||||||| || | ||| |||||||||| ||||||||||||||| |
|
|
T |
31294441 |
tgcattcaatgcatcggaaattaaagtgttaaactttttcaaagaataatttcttaatt |
31294383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 2831601 - 2831548
Alignment:
Q |
286 |
aaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
||||||||||||| |||||| | || |||||||||||| |||| |||||||||| |
|
|
T |
2831601 |
aaattgaaatatttgactttattaaaaaataatttcttgatttggaatccttaa |
2831548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 25095533 - 25095464
Alignment:
Q |
259 |
ttgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaattt |
328 |
Q |
|
|
|||||||||||| |||||||| ||| |||||||| || || |||||||||||||||||| ||||||| |
|
|
T |
25095533 |
ttgaaatttatgtattcaatgaatcataaattgaagtaactgattttttcaataaataattttttaattt |
25095464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 3973922 - 3973826
Alignment:
Q |
231 |
tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
|||| |||||| | ||||||| ||||||| |||| || |||||| |||| ||||||||||||| || ||||||| || ||||||||||||||| |
|
|
T |
3973922 |
tttaaggacttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttttaaggaataatttcttaatt |
3973826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 20)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 12787948 - 12787849
Alignment:
Q |
240 |
tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||||||||||||||||| |||||| |||||| |||| || |||||||||| |||| |||||||||||||||||||| |||||||||||| ||||| |
|
|
T |
12787948 |
tttagatagtaagtttttatgaaaatttgtgcatttaatgaattggaaattgaagcattatactttttcaataaataattttttaatttagaattcttaa |
12787849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 10565448 - 10565346
Alignment:
Q |
237 |
gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct |
336 |
Q |
|
|
||||||||||||||| ||||||| ||||||| |||||||||| ||| ||||| || ||||||||||||||||| |||| |||||||||||||||| || |
|
|
T |
10565448 |
gactttagatagtaaatttttatggaaatttgtgcattcaatacatcaaaaattaaagtattagactttttcaatgaatagtttcttaatttagaattct |
10565349 |
T |
|
Q |
337 |
taa |
339 |
Q |
|
|
||| |
|
|
T |
10565348 |
taa |
10565346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 44042637 - 44042538
Alignment:
Q |
240 |
tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||| ||||||||||||||| ||||||| ||||||||||| || |||||||||| |||| ||||||||||| |||| |||||||||| |||||||||| |
|
|
T |
44042637 |
tttaaatagtaagtttttatagaaatttgtgcattcaatgcattggaaattgaagtattgaactttttcaatgaatagtttcttaattatgaatccttaa |
44042538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 4166598 - 4166496
Alignment:
Q |
237 |
gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct |
336 |
Q |
|
|
||||||||||| |||||||||| |||| || ||||||||||| || ||||||||||||||| ||||||||||| ||||||||||| ||| ||||||| |
|
|
T |
4166598 |
gactttagatataaagtttttatggaaacttgtgcattcaatgtattggaaattgaaatattgaactttttcaatgaataatttcttgattatgaatcct |
4166499 |
T |
|
Q |
337 |
taa |
339 |
Q |
|
|
||| |
|
|
T |
4166498 |
taa |
4166496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 327
Target Start/End: Original strand, 4507917 - 4508006
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
||||||||| |||||||||||| |||| ||| ||||| |||| ||| ||||||||||||| | |||||||||||||| |||||||||| |
|
|
T |
4507917 |
actttagatggtaagtttttatggaaacttacgcatttaatgcatcagaaattgaaatatgatgttttttcaataaatagtttcttaatt |
4508006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 24457929 - 24457828
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt |
337 |
Q |
|
|
|||||| ||||||||||||||| ||| || ||| || |||| || |||||||||| |||||||||||||||| |||| ||| |||||||||| ||||| |
|
|
T |
24457929 |
actttaaatagtaagtttttatgaaaacttgtgcttttaatgcatttgaaattgaaacattagactttttcaatgaatagttttttaatttagattcctt |
24457830 |
T |
|
Q |
338 |
aa |
339 |
Q |
|
|
|| |
|
|
T |
24457829 |
aa |
24457828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 6904271 - 6904192
Alignment:
Q |
237 |
gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaata |
316 |
Q |
|
|
||||||||||||||| ||||||| |||| || ||| ||||||| ||||||||||||| |||| ||||||||||| |||| |
|
|
T |
6904271 |
gactttagatagtaattttttatggaaacttgtgcgttcaatgcatcggaaattgaagcattaaactttttcaatgaata |
6904192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 327
Target Start/End: Original strand, 20142403 - 20142532
Alignment:
Q |
198 |
tggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatat |
297 |
Q |
|
|
||||||||||||| |||| |||| || |||| |||| |||||||| ||| ||| ||||||| | || || |||||| |||| |||| ||||| || | | |
|
|
T |
20142403 |
tggaaaatgttaacgagtattcttagagcattatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgt |
20142502 |
T |
|
Q |
298 |
tagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
|| ||||||| || |||||||||||||||| |
|
|
T |
20142503 |
taaactttttaaaaaaataatttcttaatt |
20142532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 14237242 - 14237162
Alignment:
Q |
226 |
cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttt |
306 |
Q |
|
|
||||||||| |||||||| ||||||| ||||||| |||| || |||||| |||| ||||||||||||| | ||| |||||| |
|
|
T |
14237242 |
cattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaaactttt |
14237162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 39312194 - 39312245
Alignment:
Q |
272 |
attcaatggatcggaaattgaaatattagactttttcaataaataatttctt |
323 |
Q |
|
|
|||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
T |
39312194 |
attcaatgcatcggaaattgaagtattaaactttttcaatgaataatttctt |
39312245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 34336477 - 34336578
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt |
337 |
Q |
|
|
|||||| ||||||||||||| | || |||||| | |||||| || |||||||||| | || |||||||| || ||||||||||| ||| ||||||||| |
|
|
T |
34336477 |
actttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttttgacttttttaaagaataatttctttattaagaatcctt |
34336576 |
T |
|
Q |
338 |
aa |
339 |
Q |
|
|
|| |
|
|
T |
34336577 |
aa |
34336578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 33285922 - 33286018
Alignment:
Q |
231 |
tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
|||| |||||||| ||||||| ||||||| ||| || || ||| ||| |||| |||||||||| ||| | |||||||| |||||||||||||||| |
|
|
T |
33285922 |
tttaaggactttaaatagtaaatttttatgaaaaattgtgtatttaatacatcgaaaattgaaatgttaaattttttcaaaaaataatttcttaatt |
33286018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 327
Target Start/End: Original strand, 43238106 - 43238234
Alignment:
Q |
199 |
ggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatatt |
298 |
Q |
|
|
|||||||||||| |||| ||||| || |||||| | |||||| ||||||| ||||||| |||| || | |||| |||| |||| |||||||| | || |
|
|
T |
43238106 |
ggaaaatgttaacgagtgccctaagtgcactctttaagaactttaaatagtaaatttttatggaaaattctacatttaatgcatcgaaaattgaagtgtt |
43238205 |
T |
|
Q |
299 |
agactttttcaataaataatttcttaatt |
327 |
Q |
|
|
| ||||||| || ||||||||||||||| |
|
|
T |
43238206 |
aaacttttttaaggaataatttcttaatt |
43238234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 336
Target Start/End: Original strand, 41105993 - 41106100
Alignment:
Q |
229 |
tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaattt |
328 |
Q |
|
|
|||||| |||| ||| || ||||||||||| ||| || || |||||||| || | |||||||| |||| |||||||| ||| | |||||||||||||| |
|
|
T |
41105993 |
tctttaaggaccttaaatggtaagtttttacgaaaaattgtgaattcaatgcattgaaaattgaactatttgacttttttaatgattaatttcttaattt |
41106092 |
T |
|
Q |
329 |
agaatcct |
336 |
Q |
|
|
||||||| |
|
|
T |
41106093 |
ggaatcct |
41106100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 41646662 - 41646611
Alignment:
Q |
227 |
attctttacggactttagatagtaagtttttattgaaatttatgcattcaat |
278 |
Q |
|
|
|||||||| |||||||||||||||||||||||| ||| || |||||||||| |
|
|
T |
41646662 |
attctttaaggactttagatagtaagtttttatgaaaacttgtgcattcaat |
41646611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 32332944 - 32332866
Alignment:
Q |
249 |
taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
||||||||||| ||| |||| ||||||||| |||| |||| ||| ||||| || |||||||| |||||||| |||||| |
|
|
T |
32332944 |
taagtttttatgaaaacttatacattcaatgcatcgaaaatcgaagtattaaacattttcaatgaataattttttaatt |
32332866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 40464410 - 40464508
Alignment:
Q |
236 |
ggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatc |
334 |
Q |
|
|
||||||| ||||||| ||||||| | || || ||||||||| |||| |||||||||||||| || |||||||| |||| ||| |||||| |||||| |
|
|
T |
40464410 |
ggactttgaatagtaaatttttatggtaacttgtgcattcaaaacatcgaaaattgaaatattaaacattttcaatgaatagttttttaattgagaatc |
40464508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 5020092 - 5020157
Alignment:
Q |
274 |
tcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||| ||||||||||||||| || |||||||| | |||| ||||||| |||||||||||||| |
|
|
T |
5020092 |
tcaatgtatcggaaattgaaatctttgacttttttataaaattatttcttcttttagaatccttaa |
5020157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 14170420 - 14170449
Alignment:
Q |
412 |
aaggcttaattgcagttttgaccccctatg |
441 |
Q |
|
|
|||||||||||||||||||||||||||||| |
|
|
T |
14170420 |
aaggcttaattgcagttttgaccccctatg |
14170449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 2335799 - 2335843
Alignment:
Q |
285 |
gaaattgaaatattagactttttcaataaataatttcttaattta |
329 |
Q |
|
|
|||||||||||||| | ||||| ||||||||||||||||||||| |
|
|
T |
2335799 |
gaaattgaaatatttaatttttttaataaataatttcttaattta |
2335843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 46506429 - 46506326
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga--ctttttcaataaataatttcttaatttagaatcc |
335 |
Q |
|
|
||||||||||||||| |||| | ||||||||| |||| |||| ||||||||||||| ||||||| |||||||||||||| |||||||||| ||||||| |
|
|
T |
46506429 |
actttagatagtaagcttttgtggaaatttatccatttaatgcatcggaaattgaagtattagattttttttcaataaatagtttcttaattaagaatcc |
46506330 |
T |
|
Q |
336 |
ttaa |
339 |
Q |
|
|
|||| |
|
|
T |
46506329 |
ttaa |
46506326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 19652733 - 19652634
Alignment:
Q |
240 |
tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||||||||||||||||| |||||| ||||||||||| || ||||||| || ||||| || |||||||| |||||| ||||||||||||| |||||| |
|
|
T |
19652733 |
tttagatagtaagtttttatgaaaatttgtgcattcaatgcattggaaattaaactattatacattttcaatgaataatatcttaatttagaaaccttaa |
19652634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 7388877 - 7388788
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
|||||||||||||| ||||||| |||| || |||||| |||| ||||||||||| || |||||||||||||||| ||| |||||||||| |
|
|
T |
7388877 |
actttagatagtaaatttttatggaaacttgtgcatttaatgcatcggaaattggaacattagactttttcaatggatattttcttaatt |
7388788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 327
Target Start/End: Complemental strand, 38380572 - 38380471
Alignment:
Q |
226 |
cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa |
325 |
Q |
|
|
||||||||| |||||||| ||||||| ||||||| |||| ||||||||| |||| |||||||||||| | ||| |||||||||| || ||||| |||| |
|
|
T |
38380572 |
cattctttaaggactttaaatagtaaatttttatggaaaattatgcatttaatgcttcggaaattgaagtgttaaactttttcaaagaaaaatttattaa |
38380473 |
T |
|
Q |
326 |
tt |
327 |
Q |
|
|
|| |
|
|
T |
38380472 |
tt |
38380471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 327
Target Start/End: Original strand, 38949027 - 38949152
Alignment:
Q |
202 |
aaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga |
301 |
Q |
|
|
||||||||| |||| || ||||| || |||||| |||||| | ||||||| ||||||| ||| || ||||||||||| ||||||||||||| | ||| | |
|
|
T |
38949027 |
aaatgttaacgagtgttttaagggcactctttaaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgcatcggaaattgaagtgttaaa |
38949126 |
T |
|
Q |
302 |
ctttttcaataaataatttcttaatt |
327 |
Q |
|
|
||||| || ||||||||| |||||| |
|
|
T |
38949127 |
tttttttaagaaataattttttaatt |
38949152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 40781425 - 40781496
Alignment:
Q |
249 |
taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataattt |
320 |
Q |
|
|
||||||||||| ||||| ||||||||||||| ||| |||||| || |||| |||||||||||||||||||| |
|
|
T |
40781425 |
taagtttttatggaaatctatgcattcaatgcatcagaaattaaagcattaaactttttcaataaataattt |
40781496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 32893115 - 32893024
Alignment:
Q |
236 |
ggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
|||||||| ||||||| |||||| |||| || ||||||||||| |||| |||||||||| ||| ||||||| | |||||| ||||||||| |
|
|
T |
32893115 |
ggactttaaatagtaaacttttatagaaaattgtgcattcaatgcatcgaaaattgaaatgttaaactttttttaaaaataaattcttaatt |
32893024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 339
Target Start/End: Original strand, 24916382 - 24916468
Alignment:
Q |
253 |
tttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
||||||| |||| || || |||||||||||| | ||||||| |||| || |||||||| |||| |||||||||| ||||||||||| |
|
|
T |
24916382 |
tttttatagaaacttgtgtattcaatggatcaggaattgaagtattggatattttcaatgaatattttcttaattgagaatccttaa |
24916468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 5047306 - 5047221
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttctt |
323 |
Q |
|
|
|||||| ||||||||||||| || || |||||| | |||||| || |||||||||||| || ||||||| ||| ||||||||||| |
|
|
T |
5047306 |
actttaaatagtaagttttttttaaagtttatgaaatcaatgcattggaaattgaaatttttgacttttgtaatgaataatttctt |
5047221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 41370165 - 41370262
Alignment:
Q |
231 |
tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaattt |
328 |
Q |
|
|
|||| ||||||| ||||||||||||||| |||||| || | |||||| || | ||||||||||||| ||||||| | ||||||||||||||||| |
|
|
T |
41370165 |
tttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttttttgagaaataatttcttaattt |
41370262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 339
Target Start/End: Original strand, 49011880 - 49011988
Alignment:
Q |
231 |
tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttag |
330 |
Q |
|
|
|||| |||||||| ||||||||||||| | ||| || |||||| |||| |||| |||||||| ||||| ||||||| ||| |||| ||||| ||| | |
|
|
T |
49011880 |
tttaaggactttaaatagtaagtttttgtgaaaacttgtgcatttaatgcatcgaaaattgaagtattaaacttttttaatgaatagattcttgattaaa |
49011979 |
T |
|
Q |
331 |
aatccttaa |
339 |
Q |
|
|
||||||||| |
|
|
T |
49011980 |
aatccttaa |
49011988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 30978698 - 30978753
Alignment:
Q |
284 |
ggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||||||| |||| |||||||| ||||||| |||||||||||| |||| ||||| |
|
|
T |
30978698 |
ggaaattgaactatttgacttttttaataaatcatttcttaatttggaatgcttaa |
30978753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 23133068 - 23133146
Alignment:
Q |
254 |
ttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaa |
332 |
Q |
|
|
|||||| |||| || || |||||||| ||||||||||||| | ||| ||||||| || ||||||||||||||| |||| |
|
|
T |
23133068 |
ttttatagaaaattgtgtattcaatgcatcggaaattgaagtgttaaacttttttaaggaataatttcttaattgagaa |
23133146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 31871074 - 31871144
Alignment:
Q |
253 |
tttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttctt |
323 |
Q |
|
|
||||| || ||||||||| | |||||| |||||||||||||||||| ||||||| | |||||||||||| |
|
|
T |
31871074 |
tttttttttaaatttatgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttctt |
31871144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 36721589 - 36721659
Alignment:
Q |
237 |
gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagacttttt |
307 |
Q |
|
|
||||||| ||||||||||||||| ||||||| || | |||||| || | |||||||||||| |||||||| |
|
|
T |
36721589 |
gactttaaatagtaagtttttatggaaatttgtgtaatcaatgcattgagaattgaaatatttgacttttt |
36721659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 40071380 - 40071322
Alignment:
Q |
269 |
tgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
||||||||||| | |||||||||| |||| |||||||||||| |||||||||||||| |
|
|
T |
40071380 |
tgcattcaatgcgttggaaattgaagtattggactttttcaatgcataatttcttaatt |
40071322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 40062382 - 40062309
Alignment:
Q |
240 |
tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataa |
313 |
Q |
|
|
|||| ||| ||| ||||||| |||||| ||||||||||| || ||||| ||||||||| ||||||||||||| |
|
|
T |
40062382 |
tttaaataataaatttttatagaaattcgtgcattcaatgcattggaaaatgaaatattgaactttttcaataa |
40062309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 50248012 - 50247943
Alignment:
Q |
245 |
atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaa |
314 |
Q |
|
|
||||||||||||||| |||||| ||| |||||||| || | ||||| || |||| |||||||||||||| |
|
|
T |
50248012 |
atagtaagtttttatagaaattaatgaattcaatgcattgaaaatttaactatttaactttttcaataaa |
50247943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 333
Target Start/End: Original strand, 23016237 - 23016321
Alignment:
Q |
249 |
taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaat |
333 |
Q |
|
|
||||||||||| || | |||| |||||||| || |||||||||||| || ||||| || || |||||||||||||||| |||| |
|
|
T |
23016237 |
taagtttttataaaagtctatgtattcaatgcattggaaattgaaatgtttgacttctttaaataataatttcttaatttggaat |
23016321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 40480175 - 40480275
Alignment:
Q |
239 |
ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctta |
338 |
Q |
|
|
||||| ||||||||||||| || |||||| | |||||| ||||| |||||||||||| |||||||| | | |||||||||| ||||| ||||||| |
|
|
T |
40480175 |
ctttaaatagtaagttttttaaaaagtttatgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatcctta |
40480274 |
T |
|
Q |
339 |
a |
339 |
Q |
|
|
| |
|
|
T |
40480275 |
a |
40480275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 327
Target Start/End: Complemental strand, 13585 - 13478
Alignment:
Q |
220 |
taaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatt |
319 |
Q |
|
|
||||| || |||||| ||||| |||||||| |||||||| |||| || ||||||||| | ||||||||||||| ||||||||||||||||| |||| || |
|
|
T |
13585 |
taagggcactctttaaagacttgagatagtaggtttttatggaaacttgtgcattcaaagcatcggaaattgaagtattagactttttcaatgaatagtt |
13486 |
T |
|
Q |
320 |
tcttaatt |
327 |
Q |
|
|
|||||||| |
|
|
T |
13485 |
tcttaatt |
13478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 32770762 - 32770863
Alignment:
Q |
226 |
cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa |
325 |
Q |
|
|
||||||||| |||||||||||||||| |||||| ||||||||||| |||||| || ||||||||| ||||| ||||||||||||||||||||||| |
|
|
T |
32770762 |
cattctttaaggactttagatagtaaaattttatggaaatttatgcggtcaatgcattcgaaattgaagtattaagttttttcaataaataatttcttaa |
32770861 |
T |
|
Q |
326 |
tt |
327 |
Q |
|
|
|| |
|
|
T |
32770862 |
tt |
32770863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 27921991 - 27921891
Alignment:
Q |
240 |
tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga-ctttttcaataaataatttcttaatttagaatcctta |
338 |
Q |
|
|
|||||||| |||||||||| ||||||||| ||||||||| || |||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |
|
|
T |
27921991 |
tttagataataagtttttaaggaaatttatacattcaatgcatttaaaattgaaatattagaggttttttaataaataatttcttaatttagaatactta |
27921892 |
T |
|
Q |
339 |
a |
339 |
Q |
|
|
| |
|
|
T |
27921891 |
a |
27921891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 338
Target Start/End: Complemental strand, 18734473 - 18734354
Alignment:
Q |
219 |
ctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataat |
318 |
Q |
|
|
|||||| |||||| || |||||| | ||||||| ||||||| ||| || ||||||||||| ||||||||||||| | ||| ||||||| || |||||| |
|
|
T |
18734473 |
ctaaggacattctctaaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgtatcggaaattgaagtgttaaacttttttaaggaataat |
18734374 |
T |
|
Q |
319 |
ttcttaatttagaatcctta |
338 |
Q |
|
|
||||||||| |||| ||||| |
|
|
T |
18734373 |
ttcttaattgagaaacctta |
18734354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 32438074 - 32438175
Alignment:
Q |
226 |
cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa |
325 |
Q |
|
|
||||||||| |||||||| ||||||| ||||||| |||| || |||||| |||| ||||||||||||| | ||| || ||||||| |||||||| |||| |
|
|
T |
32438074 |
cattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaaaccttttcaaataataattttttaa |
32438173 |
T |
|
Q |
326 |
tt |
327 |
Q |
|
|
|| |
|
|
T |
32438174 |
tt |
32438175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 335
Target Start/End: Original strand, 11580424 - 11580522
Alignment:
Q |
237 |
gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcc |
335 |
Q |
|
|
||||||||||||||||||||||| |||| | || ||||||| ||| |||||||| |||||||||| || ||| |||||||| |||||| ||||||| |
|
|
T |
11580424 |
gactttagatagtaagtttttatggaaacatgtgtattcaatccatcaaaaattgaagtattagacttatttaatgaataattttttaattgagaatcc |
11580522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 338
Target Start/End: Complemental strand, 36260541 - 36260429
Alignment:
Q |
226 |
cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa |
325 |
Q |
|
|
|||||||| ||||||| |||||||| ||| ||| |||||| || ||| |||| ||| ||||||||| |||||||||||||||| ||||| ||||||| |
|
|
T |
36260541 |
cattctttgaggactttggatagtaaatttatataaaaatttgtgtatttaatgcatcagaaattgaagcattagactttttcaattaataacttcttaa |
36260442 |
T |
|
Q |
326 |
tttagaatcctta |
338 |
Q |
|
|
| ||||||||| |
|
|
T |
36260441 |
atgggaatcctta |
36260429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 25093909 - 25093866
Alignment:
Q |
285 |
gaaattgaaatattagactttttcaataaataatttcttaattt |
328 |
Q |
|
|
|||||||||||||| |||||||| |||||||||||||||||||| |
|
|
T |
25093909 |
gaaattgaaatatttgacttttttaataaataatttcttaattt |
25093866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 29260331 - 29260432
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt |
337 |
Q |
|
|
|||||||||||||||||||||| || ||| ||||| |||| |||| |||||||| |||| ||||| ||||| || |||||||||| ||||||||| |
|
|
T |
29260331 |
actttagatagtaagtttttatgaaagtttgagcatttaatgcatcgaaaattgaaggattaagttttttaaataattattttcttaattaagaatcctt |
29260430 |
T |
|
Q |
338 |
aa |
339 |
Q |
|
|
|| |
|
|
T |
29260431 |
aa |
29260432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 29865825 - 29865877
Alignment:
Q |
287 |
aattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||||||||| |||||||| || |||||||||||| |||||||||||||| |
|
|
T |
29865825 |
aattgaaatattcgactttttaaaagaataatttcttattttagaatccttaa |
29865877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 7933396 - 7933341
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaa |
293 |
Q |
|
|
|||||| ||||||| ||||||| ||| |||||||||||||| ||||||||||||| |
|
|
T |
7933396 |
actttaaatagtaaatttttatgaaaaattatgcattcaatgcatcggaaattgaa |
7933341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 11252722 - 11252781
Alignment:
Q |
268 |
atgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
|||||||||||| |||| |||||||| || |||||||||||||| || | |||||||||| |
|
|
T |
11252722 |
atgcattcaatgtatcgaaaattgaagtagtagactttttcaattaaaagtttcttaatt |
11252781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 8964483 - 8964393
Alignment:
Q |
249 |
taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
||||| ||||| |||||| || | |||||| || ||||||||||||||| ||||||| || ||||||| ||||||||||||| ||||| |
|
|
T |
8964483 |
taagtatttatgaaaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaa |
8964393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 9153486 - 9153579
Alignment:
Q |
245 |
atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||||||||| || |||||| || |||||||| || |||||||||| | || | |||||| || |||||||||||||||| |||||||||| |
|
|
T |
9153486 |
atagtaagtttt-ataaaaatttgtgtattcaatgcattggaaattgaagtgtttgccttttttaaagaataatttcttaatttggaatccttaa |
9153579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 33618036 - 33617966
Alignment:
Q |
245 |
atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaat |
315 |
Q |
|
|
|||||||| |||||| ||||| | ||||||||||| || ||||||| ||||||| ||||||| ||||||| |
|
|
T |
33618036 |
atagtaagattttatagaaatatgtgcattcaatgcattggaaattaaaatatttaactttttaaataaat |
33617966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 327
Target Start/End: Original strand, 33962938 - 33963036
Alignment:
Q |
229 |
tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
|||||| |||||||| ||| ||| ||||||| ||| || ||||||||||| || | |||||||| | ||| ||||||| || ||||||||||||||| |
|
|
T |
33962938 |
tctttaaggactttaaataataaatttttatgaaaaattgtgcattcaatgcattgaaaattgaagtgttaaacttttttaaagaataatttcttaatt |
33963036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 5678476 - 5678576
Alignment:
Q |
239 |
ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctta |
338 |
Q |
|
|
||||||||||||| ||||||| ||||||||| |||||||| || | |||||||| ||||| ||||||| ||| ||||||||||||| | ||||||||| |
|
|
T |
5678476 |
ctttagatagtaaatttttatagaaatttatatattcaatgtattgaaaattgaagtattaaacttttttaatgaataatttcttaactatgaatcctta |
5678575 |
T |
|
Q |
339 |
a |
339 |
Q |
|
|
| |
|
|
T |
5678576 |
a |
5678576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 10570928 - 10571047
Alignment:
Q |
220 |
taaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatt |
319 |
Q |
|
|
||||| || |||||| ||||||| |||||| ||||||| ||||||| | ||||||||| ||| |||||||| |||| || |||||||| |||| || |
|
|
T |
10570928 |
taaggacactctttaaagactttatttagtaaatttttatagaaatttgttcattcaatgcatcaaaaattgaagtattgaacattttcaatgaatagtt |
10571027 |
T |
|
Q |
320 |
tcttaatttagaatccttaa |
339 |
Q |
|
|
|||||||| ||||||||||| |
|
|
T |
10571028 |
tcttaattaagaatccttaa |
10571047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 6586428 - 6586522
Alignment:
Q |
245 |
atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
||||||| ||||||| ||||||||| ||||||| ||||||||||||| ||| ||||||||||| | ||||||| |||||||| || ||||| |
|
|
T |
6586428 |
atagtaactttttatgaaaatttatgttttcaatgcatcggaaattgaactatctgactttttcaaagattaatttcctaatttagtatgcttaa |
6586522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 1252818 - 1252754
Alignment:
Q |
242 |
tagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttt |
306 |
Q |
|
|
|||||| ||||||||||| ||||| |||||||||||| ||| |||||||| |||||||||||| |
|
|
T |
1252818 |
tagatattaagtttttatcaaaattaatgcattcaatgcatcataaattgaagtattagactttt |
1252754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 1243437 - 1243372
Alignment:
Q |
241 |
ttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttt |
306 |
Q |
|
|
||||||| |||||||||| |||||||||||||||||| ||| |||||||| ||||||| |||| |
|
|
T |
1243437 |
ttagatattaagtttttaccaaaatttatgcattcaatgcatcttaaattgaagtattagattttt |
1243372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 7465555 - 7465510
Alignment:
Q |
262 |
aaatttatgcattcaatggatcggaaattgaaatattagacttttt |
307 |
Q |
|
|
||||||||| | |||||| |||||||||||||||||| |||||||| |
|
|
T |
7465555 |
aaatttatgtaatcaatgcatcggaaattgaaatatttgacttttt |
7465510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 339
Target Start/End: Complemental strand, 6771958 - 6771838
Alignment:
Q |
219 |
ctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataat |
318 |
Q |
|
|
|||||| || |||||| |||||||| ||||||| ||||||| |||| || |||||||||| ||||||||||||||| | |||||||| |||||| |
|
|
T |
6771958 |
ctaaggacactctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatatatcggaaattgaaatggtgagttttttcaaagaataat |
6771859 |
T |
|
Q |
319 |
ttcttaatttagaatccttaa |
339 |
Q |
|
|
||||||||| |||| |||||| |
|
|
T |
6771858 |
ttcttaattgagaaaccttaa |
6771838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 3298329 - 3298231
Alignment:
Q |
229 |
tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
|||||| | ||||||||| ||| ||||||| |||| ||| |||||||||| ||| ||||||||||||| | |||||||||| |||| |||||||||| |
|
|
T |
3298329 |
tctttaagaactttagatgttaaatttttatggaaacttaagcattcaatgcatcagaaattgaaatatgaagctttttcaatgaatagtttcttaatt |
3298231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 327
Target Start/End: Original strand, 44319819 - 44319948
Alignment:
Q |
198 |
tggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatat |
297 |
Q |
|
|
||||||||||||| |||| |||| || |||| |||| |||||||| ||| ||| ||||||| | || || |||||| |||| |||| ||||| || | | |
|
|
T |
44319819 |
tggaaaatgttaacgagtattcttagagcattatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgt |
44319918 |
T |
|
Q |
298 |
tagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
|| ||||||| || |||||||||||||||| |
|
|
T |
44319919 |
taaactttttaaaaaaataatttcttaatt |
44319948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 36061530 - 36061607
Alignment:
Q |
262 |
aaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||| || |||||||| || |||||| | | |||| |||||||| ||||||||||||||| |||||||||||||| |
|
|
T |
36061530 |
aaatttgtgtattcaatgcattggaaatagtagtatttgacttttttaataaataatttcttgctttagaatccttaa |
36061607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 39170380 - 39170331
Alignment:
Q |
285 |
gaaattgaaatattagactttttcaataaataatttcttaatttagaatc |
334 |
Q |
|
|
|||||||||| |||| ||||||| ||||||||||||||||||||| |||| |
|
|
T |
39170380 |
gaaattgaaacattaaactttttgaataaataatttcttaatttacaatc |
39170331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 24557833 - 24557734
Alignment:
Q |
240 |
tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaattta-gaatcctta |
338 |
Q |
|
|
|||||| ||||||||||| | ||||| ||||| ||||| || | |||||||| ||||||||||||| |||||||||||| |||||| | ||||||||| |
|
|
T |
24557833 |
tttagaaagtaagtttttgtgtaaattg-tgcatacaatgtattgaaaattgaagtattagacttttttaataaataattttttaattgaggaatcctta |
24557735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 31902744 - 31902839
Alignment:
Q |
229 |
tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttctta |
324 |
Q |
|
|
|||||| |||||||| ||||||| ||||||| |||| || || | |||||| || | ||||||||||||| |||||| | || |||||||||||| |
|
|
T |
31902744 |
tctttaaggactttaaatagtaaatttttatggaaaattgtgtagtcaatgtattgaaaattgaaatatttgactttcttaaggaataatttctta |
31902839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 34681787 - 34681693
Alignment:
Q |
245 |
atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
||||||| ||||||| ||| || || ||| |||| || |||||||||| |||| ||||||| || |||||||||| ||||||||||| ||||| |
|
|
T |
34681787 |
atagtaactttttataaaaacttgtgtatttaatgcattggaaattgaactatttgacttttgtaaaaaataatttcctaatttagaatgcttaa |
34681693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 6707980 - 6707891
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
|||||| ||| |||| |||||| ||||||||| |||||| || ||| |||||||||||||| |||| |||| || |||||||||||| |
|
|
T |
6707980 |
actttacataataagattttatagaaatttatacattcagtgtatcaaaaattgaaatattaagtttttccaatgaacaatttcttaatt |
6707891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 17883317 - 17883418
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt |
337 |
Q |
|
|
|||||| ||||||||||||| | ||||||||| | |||||| | ||||||| || | || |||||||| || |||||||||||| ||| | ||||||| |
|
|
T |
17883317 |
actttaaatagtaagtttttgtcaaaatttatgaaatcaatgcgttggaaattaaagtttttgacttttttaaaaaataatttctttattaaaaatcctt |
17883416 |
T |
|
Q |
338 |
aa |
339 |
Q |
|
|
|| |
|
|
T |
17883417 |
aa |
17883418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 22739463 - 22739540
Alignment:
Q |
262 |
aaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||| | ||||||||| |||| ||||||| ||| ||| |||| ||||||||||||||||||| | ||||||||| |
|
|
T |
22739463 |
aaatttgtacattcaatgcatcgaaaattgatgtatcagatatttttaataaataatttcttaattgaaaatccttaa |
22739540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 339
Target Start/End: Original strand, 26402786 - 26402887
Alignment:
Q |
238 |
actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt |
337 |
Q |
|
|
|||||| ||||||||||||| | ||||||||| | |||||| || | |||||||| | || |||||||| || ||||||||||| ||| |||||||| |
|
|
T |
26402786 |
actttaaatagtaagtttttgtcaaaatttatgaaatcaatgtattgaaaattgaagtttttgacttttttaaggaataatttctttattaggaatcctt |
26402885 |
T |
|
Q |
338 |
aa |
339 |
Q |
|
|
|| |
|
|
T |
26402886 |
aa |
26402887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 41898352 - 41898255
Alignment:
Q |
242 |
tagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
|||||| ||| || |||| |||| || | |||| |||| ||||||||||||| |||| ||||||||||| || | |||||||||| | ||||||||| |
|
|
T |
41898352 |
tagataataaattgttatggaaacttgtacatttaatgcatcggaaattgaattattgaactttttcaatgaaaagtttcttaattgaaaatccttaa |
41898255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 2699317 - 2699270
Alignment:
Q |
280 |
gatcggaaattgaaatattagac-tttttcaataaataatttcttaatt |
327 |
Q |
|
|
|||||||||||||||||||| || |||||||| |||||||||||||||| |
|
|
T |
2699317 |
gatcggaaattgaaatattaaacatttttcaa-aaataatttcttaatt |
2699270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 5495991 - 5496075
Alignment:
Q |
255 |
tttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa |
339 |
Q |
|
|
||||| |||| || ||||||||||| |||| ||||| || | ||| || ||||||| ||||||||||||||| |||| |||||| |
|
|
T |
5495991 |
tttatggaaagttgtgcattcaatgcatcgaaaattaaagtgttaaacattttcaaggaataatttcttaattgagaaaccttaa |
5496075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 6775331 - 6775232
Alignment:
Q |
240 |
tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaata-ttagactttttcaataaataatttcttaatttagaatcctta |
338 |
Q |
|
|
|||| ||||||| | ||||| |||| || ||||||||||| |||||||||| ||||| | ||| |||||||| |||||||| |||||| |||| ||||| |
|
|
T |
6775331 |
tttaaatagtaaatatttatggaaaattgtgcattcaatgcatcggaaattcaaatagtgaga-tttttcaaagaataatttattaattgagaaacctta |
6775233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Original strand, 7873508 - 7873536
Alignment:
Q |
413 |
aggcttaattgcagttttgaccccctatg |
441 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
7873508 |
aggcttaattgcagttttgaccccctatg |
7873536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 38452236 - 38452188
Alignment:
Q |
275 |
caatggatcggaaattgaaatattagactttttcaataaataatttctt |
323 |
Q |
|
|
||||| |||||||||||||||||| |||||||| | |||||||||||| |
|
|
T |
38452236 |
caatgcatcggaaattgaaatatttgacttttttataaaataatttctt |
38452188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0633 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0633
Description:
Target: scaffold0633; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 5015 - 5097
Alignment:
Q |
245 |
atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt |
327 |
Q |
|
|
||||||| ||||||| |||| |||||||||||||| || |||||||||||| ||| ||||||| || |||||||| |||||| |
|
|
T |
5015 |
atagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaatt |
5097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 332
Target Start/End: Original strand, 122457 - 122563
Alignment:
Q |
226 |
cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa |
325 |
Q |
|
|
||||||||| ||| |||| |||||| ||||||| |||| || |||||| |||| |||||||||| || | ||| |||||||||| ||||||||||||| |
|
|
T |
122457 |
cattctttaaggattttaagtagtaattttttatggaaaattgtgcatttaatgcatcggaaattaaagtgttaaactttttcaaagaataatttcttaa |
122556 |
T |
|
Q |
326 |
tttagaa |
332 |
Q |
|
|
|| |||| |
|
|
T |
122557 |
ttgagaa |
122563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 25585 - 25640
Alignment:
Q |
261 |
gaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaata |
316 |
Q |
|
|
||||||| | |||||| || |||| |||||||||||||||||| |||||||||||| |
|
|
T |
25585 |
gaaatttgtacattcactgcatcgaaaattgaaatattagactctttcaataaata |
25640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 18114 - 18214
Alignment:
Q |
239 |
ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctta |
338 |
Q |
|
|
||||| ||||||||||||| || |||||| | |||||| ||||| |||||||||||| |||||||| | | |||||||||| ||||| ||||||| |
|
|
T |
18114 |
ctttaaatagtaagttttttaaaaagtttatgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatcctta |
18213 |
T |
|
Q |
339 |
a |
339 |
Q |
|
|
| |
|
|
T |
18214 |
a |
18214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 439
Target Start/End: Original strand, 201304 - 201332
Alignment:
Q |
411 |
taaggcttaattgcagttttgacccccta |
439 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
201304 |
taaggcttaattgcagttttgacccccta |
201332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 15885 times since January 2019
Visitors: 3757