View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_51 (Length: 444)
Name: NF1390_high_51
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 1529912 - 1529718
Alignment:
| Q |
8 |
tgagatgaacataagtatcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgtt------ |
101 |
Q |
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| T |
1529912 |
tgagatgaacataagtatcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaaca |
1529813 |
T |
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| Q |
102 |
-----gtaatgaaagaatagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcgacgcaacacatgttgtctcagacgaagc |
191 |
Q |
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| T |
1529812 |
gcaaagtaatgaaagaatagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcggcgcaacacatgttgtctcagacgaagc |
1529718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 1529663 - 1529599
Alignment:
| Q |
247 |
gttatgccgaacatggccgtcccggcgaggttttatctgtacatttttagatggcgaaacagtgt |
311 |
Q |
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| T |
1529663 |
gttatgccgaacatggccgtcccggcgaggttttatctgtacatttttagatggcgaaacagtgt |
1529599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 26841687 - 26841487
Alignment:
| Q |
8 |
tgagatgaacataagtatcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgtt------ |
101 |
Q |
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| T |
26841687 |
tgagatgaacataagtatcaatattagaagatttcatataacccaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaaca |
26841588 |
T |
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| Q |
102 |
-----------gtaatgaaagaatagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcgacgcaacacatgttgtctcagacgaag |
190 |
Q |
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| T |
26841587 |
ggcacaacaaagtaacgaaagaatagactcgcctttgaagcaaagagcaaggacgacggagaaacgattgtcggcgcaacacatgttgtctccgacgaag |
26841488 |
T |
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| Q |
191 |
c |
191 |
Q |
| |
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| |
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| T |
26841487 |
c |
26841487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 22476806 - 22476949
Alignment:
| Q |
8 |
tgagatgaacataagtatcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgtt------ |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |
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| T |
22476806 |
tgagatgaacataagtatcaatattagaagatttcatataaccaaataattagaaggctgcaattttaaaattaatttagggatttctcatgttgtaaca |
22476905 |
T |
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| Q |
102 |
-----gtaatgaaagaatagactcacctttgaagcaaagagcaa |
140 |
Q |
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| T |
22476906 |
acaaagtaatgaaagaatagactcacctttgaagcaaagagcaa |
22476949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 26841426 - 26841339
Alignment:
| Q |
252 |
gccgaacatggccgtcccggcgaggttttatctgtacatttttagatggcgaaacagtgtttggcttaggcgatgaccgtggttgaag |
339 |
Q |
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| T |
26841426 |
gccgaacatggctgttccggcgaggttttatctgtacatttttagatggcgaaacagtgtttggcttaggcgatgacagtggttgaag |
26841339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 22477025 - 22477065
Alignment:
| Q |
299 |
ggcgaaacagtgtttggcttaggcgatgaccgtggttgaag |
339 |
Q |
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| T |
22477025 |
ggcgaaacagtgtttggcttaggcgatgactgtggttgaag |
22477065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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