View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_57 (Length: 424)
Name: NF1390_high_57
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_57 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Original strand, 8490696 - 8491113
Alignment:
| Q |
7 |
tcgaataatatacatcaaaacggaatcagttttctaaaaagtgttgatggaaaggtagctctcaaaattgaatgaacatttatgattcccttatgtcctt |
106 |
Q |
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| T |
8490696 |
tcgaagaatgtacatcaaaacggaatcggttttctaaaaagtgttgatggaaaggtagctctcaaaattgaatgaacatttatgattcccttatgtcctt |
8490795 |
T |
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| Q |
107 |
caccaaagnnnnnnnngggacgcccatatgcttaaatgtcaatacatataccttatattttatctcatgtatccnnnnnnntatcacacaannnnnnnat |
206 |
Q |
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| T |
8490796 |
caccaaagaaaaaaaagggatgcccatatgcttaaatgtcaatacatataccttatattttatctcatgtatccaaaaaaatatcacacaatttttttat |
8490895 |
T |
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| Q |
207 |
aactaaaaacaacaatcattggccgacacttatgattcctttggatacaaacaaattgtttgttaagatgcttgatgatatacaagacaaagggaaacag |
306 |
Q |
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| T |
8490896 |
aactaaaaacaacaatcattggccgacacttatgattcctttggatacaaacaaattgtttgttaagatgcttgatgatatacaagacaaagggaaacag |
8490995 |
T |
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| Q |
307 |
tattgcttaccctcttcagttgttgagtttgtgctatcacaccaaattgcttccctaatgcgaggaggtgcaaatgctgacccttcatgaaatgatgaat |
406 |
Q |
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| T |
8490996 |
tattgcttaccctcttcagttgttgagtttgtgctatcacaccaaattgcttccctaatgcgaggaggtgcaaatgctgacccttcatgaaatgatgaat |
8491095 |
T |
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| Q |
407 |
gatgacctaaaggaactc |
424 |
Q |
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| T |
8491096 |
gatgacctaaaggaactc |
8491113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 8490434 - 8490529
Alignment:
| Q |
17 |
tacatcaaaacggaatcagttttctaaaaagtgttgatggaaaggtagctctcaaaattgaatgaacatttatgattcccttatgtccttcaccaa |
112 |
Q |
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| T |
8490434 |
tacatccagacggaatcagttttctaaaaagtgttgagggagaggtagctctaaaaattgaatgaacatttatggtacccttatgtccttcaccaa |
8490529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 314 - 424
Target Start/End: Original strand, 8474041 - 8474151
Alignment:
| Q |
314 |
taccctcttcagttgttgagtttgtgctatcacaccaaattgcttccctaatgcgaggaggtgcaaatgctgacccttcatgaaatgatgaatgatgacc |
413 |
Q |
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| T |
8474041 |
taccttcttcggttgtcgagtttgtactaccacaccaaatggcctccctaatgcgaggaggtgcaaatgcaggcccttgaaggaatgaggaattatgacc |
8474140 |
T |
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| Q |
414 |
taaaggaactc |
424 |
Q |
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|||||||||| |
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| T |
8474141 |
caaaggaactc |
8474151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 8489909 - 8489962
Alignment:
| Q |
60 |
ggtagctctcaaaattgaatgaacatttatgattcccttatgtccttcaccaaa |
113 |
Q |
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| T |
8489909 |
ggtagctctcacaattgaattaacatttatgatgccgttatgtccttcaccaaa |
8489962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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