View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_high_6 (Length: 744)

Name: NF1390_high_6
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_high_6
NF1390_high_6
[»] chr3 (1 HSPs)
chr3 (8-716)||(47506213-47506900)


Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 8 - 716
Target Start/End: Complemental strand, 47506900 - 47506213
Alignment:
Q  8 caccacagacaccagcaaggttatgttaataatggtggatactcacttcatccatgtgagcacactgccccgtgggtttcgggagtgacaaatttgaatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47506900 caccacagacaccagcaaggttatgttaataatggtggatactcacttcatccatgtgagcacactgccccgtgggtttcgggagtgacaaatttgaatg 47506801  T
Q  108 aatagcagcaagagaagagaaagggacagtcaaagcattgggatttgtgaatatcaaactctcttattataccataagatcgatgattgaattgaaacag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    |||||||||||||||||||    
T  47506800 aatagcagcaagagaagagaaagggacagtcaaagcattgggatttgtgaatatcaaa--ctcttattataccataa----gatgattgaattgaaacag 47506707  T
Q  208 acacacttttaatttgttgaaataagtggtatgggagttagtggttgtggggtatataaactcgttattataagtgtgtcagaaagaaattttttataag 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47506706 acacacttttaatttgttgaaataagtggtatgggagttagtggttgtggggtatataaactcgttattataagtgtgtcagaaagaaattttttataa- 47506608  T
Q  308 tatgtataatgcacacccaccacaaaacaatcatgttcacttatccccttccttcattgagttttttggggtcacatttcattttannnnnnnntgcatg 407  Q
       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  47506607 ---gtataatgcatacccaccacaaaacaatcatgttcacttatccccttccttcattgagttttttggggtcacatttcattttacccccccctgcatg 47506511  T
Q  408 acagctctttccacaattcaactctacctatatacatatttagatgctgtaaatcctttctttttcaattttctaatttagtaaaacattgtcatcaatt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47506510 acagctctttccacaattcaactctacctatatacatatttagatgctgtaaatcctttctttttcaattttctaatttagtaaaacattgtcatcaatt 47506411  T
Q  508 ttcctttgggccaataaaacagttgcaattaaggagtaccttgtccagaaagtgtgctacaaaaaatttaaatgatcaacaactgcctaaaattatccaa 607  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47506410 tgcctttgggccaataaaacagttgcaattaaggagtaccttgtccagaaagtgtgctacaaaaaatttaaatgatcaacaactgcctaaaattatccaa 47506311  T
Q  608 gtctataaaacctagaaggtggtacaaataaaaattgagaga-ttttttttaggctttgcttatgtttgcacnnnnnnnnnngtacaacttgtgctttta 706  Q
    |||||||||||||||||||||||||          ||||| | |||||||||||||||||||||||||||||          ||||||||||||||||||    
T  47506310 gtctataaaacctagaaggtggtac----------tgagatatttttttttaggctttgcttatgtttgcac--atttttttgtacaacttgtgctttta 47506223  T

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