View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_63 (Length: 391)
Name: NF1390_high_63
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_63 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 45201931 - 45201629
Alignment:
| Q |
11 |
caaaggcaaaacttcatcatcaacttcatgaatttgaaaaacaggtgcatatcgacctaaacctaatccattaagccaaattctaacaccatcttcacca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201931 |
caaaggcaaaacttcatcatcaacttcatgaatttgaaaaacaggtgcatatcgacctaaacctaatccattaagccaaattctaacaccatcttcacca |
45201832 |
T |
|
| Q |
111 |
caacttcctcttccaccatcttcattcctagcatcaaaatcgcctaaattctctgaagaacgaattctactacccgaattatcaccttcaaaatctcgat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201831 |
caacttcctcttccaccatcttcattcctagcatcaaaatcacctaaattctctgaagaacgaattctactacccgaattatcaccttcaaaatctcgat |
45201732 |
T |
|
| Q |
211 |
acaaatcatcttcattatcattatcaacatcttcaccttcttcgattcgcgaagatacccaattcgatcttggtcttttggaaccctttttcactttcca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201731 |
acaaatcatcttcattatcattatcaacatcttcaccttcttcgattcgcgaagatacccaattcgatcttggtcttttggaaccctttttcactttcca |
45201632 |
T |
|
| Q |
311 |
gct |
313 |
Q |
| |
|
||| |
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|
| T |
45201631 |
gct |
45201629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 40340911 - 40340816
Alignment:
| Q |
15 |
ggcaaaacttcatcatcaacttcatgaatttgaaaaacaggtgcatatcgacctaaacctaatccattaagccaaattctaacaccatcttcacca |
110 |
Q |
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|||||||||||||||||||||||||| | || ||| || || ||||| |||||||| || || |||||||||||||| |||| |||||||||||| |
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| T |
40340911 |
ggcaaaacttcatcatcaacttcatgcacttcaaacacgggcgcataacgacctaatcccaacccattaagccaaatcctaatcccatcttcacca |
40340816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 313
Target Start/End: Complemental strand, 18865804 - 18865721
Alignment:
| Q |
231 |
ttatcaacatcttcaccttcttcgattcgcgaagatacccaattcgatcttggtc-ttttggaaccctttttcactttccagct |
313 |
Q |
| |
|
||||| |||||||||| ||||| |||||| ||||| || || |||||||||||| ||||||| |||||||||| ||||||||| |
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| T |
18865804 |
ttatcgacatcttcacgttctttgattcgtgaagaaactaaactcgatcttggtctttttggagccctttttcaatttccagct |
18865721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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