View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_70 (Length: 369)
Name: NF1390_high_70
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 29 - 366
Target Start/End: Complemental strand, 32875089 - 32874752
Alignment:
| Q |
29 |
agtttggtttgcaaagatatactatttcctagcaaagaatgatagtatgttttctttatatttctgtgcaaagatgttgagaagtttggtgaagtagaag |
128 |
Q |
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| T |
32875089 |
agtttggtttgcaaagatatactatttcctagcaaagaatgatagtatgttttctttatatttctgtgcaaagatgttgagaagtttggtgaagtagaag |
32874990 |
T |
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| Q |
129 |
cagccattgtttaatttctttgccgctcttgctttatttgaattataaccaagctttaagagataaggtgaatgcagtagcataaaccataaccttacaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32874989 |
cagccattgtttaatttctttgccgctcttgctttatttgaattataaccaagctttaagagataaggtgaatgcagtagcataaaccataaccttacaa |
32874890 |
T |
|
| Q |
229 |
atccaatataacaggaacaaaaaataaatatctctaagatttttgttgttctttttgtctatatgctaattatttttgtcattagttccatgtgatattt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32874889 |
atccaatataacaggaacaaaaaataaatatctctaagatttttgttgttctttttgtctatatgctaattatttttgtcattagttccatgtgatattt |
32874790 |
T |
|
| Q |
329 |
ttgtgagtaaaatgtgtgcctggtatattcttggagat |
366 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
32874789 |
ttgtgagtaaaatgtgtgcctggtatattcttgcagat |
32874752 |
T |
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