View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_72 (Length: 368)
Name: NF1390_high_72
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_72 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 363
Target Start/End: Original strand, 53193718 - 53194051
Alignment:
| Q |
30 |
ggtgtatcacactgtggatgttccaagtcccagtaaccttttacaattcactaaaacgttgttctactagtaagtcctaaatatcaacaagctttatacc |
129 |
Q |
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| T |
53193718 |
ggtgtatcacactgtggatgttccaagtcccagtaaccttttacaattcactaaaacgttgttctactagtaagtcctaaatatcaacaagctttatacc |
53193817 |
T |
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| Q |
130 |
caaagctgtagctttttgctgttaatgatcatatcaacctcttagatttgcccacctcaagctaaaaaagatatcaaccatgcatatattatactgctca |
229 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53193818 |
caaagctgtagctttttgctgttcatgatcatatcaacctcttagatttgcccacctcaagctaaaaaagatatcaaccatgcatatattatactgctca |
53193917 |
T |
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| Q |
230 |
atggatggtggaaatgggatcacgtcaaaattaaccacgcatcattatatatacgtatgtatgtatatgcttcatttaacagtttttgtgacccgcgtac |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53193918 |
atggatggtggaaatgggatcacgtcaaaattaaccacgcttcattatatatgcgtatgtatgtatatgcttcatttaacagtttttgtgacccgcgtac |
53194017 |
T |
|
| Q |
330 |
atacccatagaaaagtcaccacatattgttggag |
363 |
Q |
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|||| ||||||||||||||||||| | ||||||| |
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| T |
53194018 |
atacacatagaaaagtcaccacatttggttggag |
53194051 |
T |
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