View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_high_74 (Length: 360)

Name: NF1390_high_74
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_high_74
NF1390_high_74
[»] chr2 (4 HSPs)
chr2 (13-357)||(35671896-35672240)
chr2 (13-197)||(38456209-38456393)
chr2 (60-135)||(13805218-13805293)
chr2 (202-341)||(19700244-19700389)
[»] chr6 (2 HSPs)
chr6 (13-231)||(20130989-20131211)
chr6 (13-231)||(22201659-22201881)
[»] chr4 (2 HSPs)
chr4 (202-341)||(19668340-19668485)
chr4 (202-341)||(8803071-8803216)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 35671896 - 35672240
Alignment:
Q  13 aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  35671896 aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaaggaataaaattcaattgaaaaagttatttcaagtgtagaatttg 35671995  T
Q  113 gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtgtaatactctagttttca 212  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  35671996 attaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtatagtactctagttttca 35672095  T
Q  213 ccaaaaagaagataaacaaattaaaattgtaggcttttgatataagcacacaccaaaaacatttcttgcctacatgtacaaagaataaatatcataatca 312  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  35672096 ccaaaaagaagataaacaaattaacattgtaggcttttgatataagcacacaccaaaaacatttcttgcctacatgtataaagaatgaatatcataatca 35672195  T
Q  313 ctaacaacaattatatgctccataatcatcaacataacccaatcc 357  Q
     ||||||||| |||| |||||||||||||||||| ||||||||||    
T  35672196 ttaacaacaactatacgctccataatcatcaacagaacccaatcc 35672240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 38456209 - 38456393
Alignment:
Q  13 aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttg 112  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38456209 aatatcatctcaaccattaatatatccactaccatttctcatctgctaagaaaaaagaaattaaattcaattgaaaaagttatttcaagtgcagaatttg 38456308  T
Q  113 gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtgta 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38456309 gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtgta 38456393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 13805218 - 13805293
Alignment:
Q  60 aagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttggttaagaaactaattcaaacata 135  Q
    ||||||||||||| ||||  |||||||||||||||| |||| |||||||||| ||| ||||||||| |||||||||    
T  13805218 aagaaaaaagaaaaaaaaagcaattgaaaaagttatctcaactgcagaatttagtttagaaactaaatcaaacata 13805293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 341
Target Start/End: Original strand, 19700244 - 19700389
Alignment:
Q  202 tctagttttcaccaaaaagaagataaacaaattaaaattgtaggcttttgatataagcacacacca------aaaacatttcttgcctacatgtacaaag 295  Q
    |||||||||||| ||||||||||| |||||| || | |  |||||||||||||| ||||||| | |      |||||| || ||||||||| ||| ||||    
T  19700244 tctagttttcacaaaaaagaagattaacaaactacattgttaggcttttgatatcagcacactctacatcctaaaacaatttttgcctacacgtagaaag 19700343  T
Q  296 aataaatatcataatcactaacaacaattatatgctccataatcat 341  Q
     || ||||||||||||| ||||||||||||||  ||||| ||||||    
T  19700344 catgaatatcataatcattaacaacaattatactctccacaatcat 19700389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 20130989 - 20131211
Alignment:
Q  13 aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttg 112  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20130989 aatatcatctcaaccattaatatctccactaccatttctcatctgctaagaaaaaaggaataaaattcaattgaaaaagttatttcaagtgcagaatttg 20131088  T
Q  113 gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagat----tatgtgtaatactctagtt 208  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||| ||||||||||    
T  20131089 gttaagaaactaattcaaacatagggcctacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatctatatgtagtactctagtt 20131188  T
Q  209 ttcaccaaaaagaagataaacaa 231  Q
    |||||||||||||||||||||||    
T  20131189 ttcaccaaaaagaagataaacaa 20131211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 22201881 - 22201659
Alignment:
Q  13 aatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttg 112  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22201881 aatatcatctcaaccattaatatctccactaccatttctcatctgctaagaaaaaaggaataaaattcaattgaaaaagttatttcaagtgcagaatttg 22201782  T
Q  113 gttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagat----tatgtgtaatactctagtt 208  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||| ||||||||||    
T  22201781 gttaagaaactaattcaaacatagggcctacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatctatatgtagtactctagtt 22201682  T
Q  209 ttcaccaaaaagaagataaacaa 231  Q
    |||||||||||||||||||||||    
T  22201681 ttcaccaaaaagaagataaacaa 22201659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 341
Target Start/End: Original strand, 19668340 - 19668485
Alignment:
Q  202 tctagttttcaccaaaaagaagataaacaaattaaaattgtaggcttttgatataagcacac------accaaaaacatttcttgcctacatgtacaaag 295  Q
    |||||||||||| ||||||||||| |||||| || | || |||||||||||||| |||||||       || |||||| || ||||||||| ||| ||||    
T  19668340 tctagttttcacaaaaaagaagattaacaaactacatttttaggcttttgatatcagcacactctacatcctaaaacaatttttgcctacacgtagaaag 19668439  T
Q  296 aataaatatcataatcactaacaacaattatatgctccataatcat 341  Q
     || ||||||||||||| ||||||||||||||  ||||| ||||||    
T  19668440 catgaatatcataatcattaacaacaattatactctccacaatcat 19668485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 341
Target Start/End: Complemental strand, 8803216 - 8803071
Alignment:
Q  202 tctagttttcaccaaaaagaagataaacaaattaaaattgtaggcttttgatataagcacacacca------aaaacatttcttgcctacatgtacaaag 295  Q
    |||||||||||| ||||||||||| |||||| || | |  |||||||||||||| ||||||| | |      |||||| || ||||||||| ||| ||||    
T  8803216 tctagttttcacaaaaaagaagattaacaaactacattgttaggcttttgatatcagcacactctacatcctaaaacaatttttgcctacacgtagaaag 8803117  T
Q  296 aataaatatcataatcactaacaacaattatatgctccataatcat 341  Q
     || ||||||||||||| |||||| |||||||  ||||| ||||||    
T  8803116 catgaatatcataatcattaacaagaattatactctccacaatcat 8803071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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