View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_high_78 (Length: 354)

Name: NF1390_high_78
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_high_78
NF1390_high_78
[»] chr2 (3 HSPs)
chr2 (167-325)||(29276449-29276604)
chr2 (26-89)||(29276664-29276727)
chr2 (111-144)||(29276673-29276706)
[»] scaffold0175 (2 HSPs)
scaffold0175 (167-325)||(27647-27800)
scaffold0175 (26-72)||(27528-27574)
[»] chr4 (3 HSPs)
chr4 (167-325)||(55857989-55858151)
chr4 (26-92)||(55857866-55857932)
chr4 (111-144)||(55857887-55857920)


Alignment Details
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 167 - 325
Target Start/End: Complemental strand, 29276604 - 29276449
Alignment:
Q  167 tgaaatgtgttcattgtttgaaatcaaatattccatggattttgataatgacagaaaat-gccaagaattagtatatttttgtcaagnnnnnnnntaaat 265  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  | | ||||  |||||||||||| ||||||  |||||         |||||    
T  29276604 tgaaatgtgtacattgtttgaaatcaaatattccatggattttgataacaaaaaaaaaaagccaagaattagcatattt--gtcaa--caaaaaataaat 29276509  T
Q  266 aatgtgattcattcttgaaacattcattcttaatagaacagtagtgactataggttgttt 325  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  29276508 aatgtgattcattcttgaaacattcattcttaatagaaaagtggtgactataggttgttt 29276449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 29276727 - 29276664
Alignment:
Q  26 ttagcggtaagtatatgagacatttaggtaattatgatcttagcttagacttaaagttatgaca 89  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  29276727 ttagcagtaagtatttgagacatttaggtaattatgatcttagcttaaacttaaagtaatgaca 29276664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 29276706 - 29276673
Alignment:
Q  111 atttagataattatgatcttagcttaaacttaaa 144  Q
    |||||| |||||||||||||||||||||||||||    
T  29276706 atttaggtaattatgatcttagcttaaacttaaa 29276673  T

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Target: scaffold0175 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 325
Target Start/End: Original strand, 27647 - 27800
Alignment:
Q  167 tgaaatgtgttcattgtttgaaatcaaatattccatggattttgataatgacagaaaatgccaagaattagtatatttttgtcaagnnnnnnnntaaata 266  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||||||  |||  ||||| ||||||||||||||  |||||||||        ||||||    
T  27647 tgaaatgtgtacattgtttgaaataaaatatttcatggattttgataacaacaataaatgtcaagaattagtata--tttgtcaag--aaaaaataaata 27742  T
Q  267 atgtgattcattcttgaaacattcattcttaatagaacagtagtgactataggttgttt 325  Q
     |||||||||||||||||| |||||||||||||| || ||| |||||||||||||||||    
T  27743 gtgtgattcattcttgaaatattcattcttaata-aaaagtggtgactataggttgttt 27800  T

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Target: scaffold0175; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 27528 - 27574
Alignment:
Q  26 ttagcggtaagtatatgagacatttaggtaattatgatcttagctta 72  Q
    ||||| |||||||| ||||||||||||||| ||||||||||| ||||    
T  27528 ttagcagtaagtatttgagacatttaggtagttatgatcttacctta 27574  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 325
Target Start/End: Original strand, 55857989 - 55858151
Alignment:
Q  167 tgaaatgtgttcattgtttgaaatcaaatattccatggattttgataatgacagaa--------aatgccaagaattagtatatttttgtcaagnnnnnn 258  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  | | ||        || |||||||||||| ||||||  |||||           
T  55857989 tgaaatgtgtacattgtttgaaatcaaatattccatggattttgataacaaaaaaataaaaataaaagccaagaattagcatattt--gtcaa--caaaa 55858084  T
Q  259 nntaaataatgtgattcattcttgaaacattcattcttaatagaacagtagtgactataggttgttt 325  Q
      ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||    
T  55858085 aataaataatgtgattcattcttgaaacattcattcttaatagaaaaatggtgactataggttgttt 55858151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 55857866 - 55857932
Alignment:
Q  26 ttagcggtaagtatatgagacatttaggtaattatgatcttagcttagacttaaagttatgacagcc 92  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  55857866 ttagcagtaagtatttgagacatttaggtaattatgatcttagcttaaacttaaagtaatgacagcc 55857932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 55857887 - 55857920
Alignment:
Q  111 atttagataattatgatcttagcttaaacttaaa 144  Q
    |||||| |||||||||||||||||||||||||||    
T  55857887 atttaggtaattatgatcttagcttaaacttaaa 55857920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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