View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_80 (Length: 353)
Name: NF1390_high_80
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_80 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 31 - 342
Target Start/End: Complemental strand, 14214674 - 14214363
Alignment:
| Q |
31 |
ttgtatgaatctttatgcaatgagtacaaccctagcataaatatcaaattatgcttgaaaattttgaaaactgacccaaaaatcacctccgcgacaaatt |
130 |
Q |
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| T |
14214674 |
ttgtatgaatctttatgcaatgagtacaaccctagcataaatatcaaattatgcttgaaaattttgaaaactgacccaaaaatcacctctgcgacaaatt |
14214575 |
T |
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| Q |
131 |
accacgacctttccgagcatatcttgtatatggttctaaataacgcggcagcggttcaacttgattattttgaaaagagaaaactttttcctaccgatcc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14214574 |
accacgacctttccgagcatatcttgtatatggttctaaataacgcggcagcggttcaacttgattattttgaaaagagaaaactttttcctactgatcc |
14214475 |
T |
|
| Q |
231 |
agctcttaacagttgtgttaatgaattctatgaaacaactattaatgaattattaaaggcattgagtctgttgccaactgatcctcatactgcaagagaa |
330 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||||| |
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| T |
14214474 |
agctcttaacagttgtgtcaatgaattctatgaaacaattattaatgaattattaaaggcagtgagtctgttgccatctgatcctaaaactgcaagagaa |
14214375 |
T |
|
| Q |
331 |
agtgcaacagct |
342 |
Q |
| |
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||||||| |||| |
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| T |
14214374 |
agtgcaatagct |
14214363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 31 - 342
Target Start/End: Complemental strand, 14173186 - 14172872
Alignment:
| Q |
31 |
ttgtatgaatctttatgcaatgagtacaac---cctagcataaatatcaaattatgcttgaaaattttgaaaactgacccaaaaatcacctccgcgacaa |
127 |
Q |
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|||||||||||||||||||||||||||||| ||| || ||||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||| |
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| T |
14173186 |
ttgtatgaatctttatgcaatgagtacaacaaccctggccaaaatatccaattatgcttgaatattttgaaaactgacccaaaaatcacctcagccacaa |
14173087 |
T |
|
| Q |
128 |
attaccacgacctttccgagcatatcttgtatatggttctaaataacgcggcagcggttcaacttgattattttgaaaagagaaaactttttcctaccga |
227 |
Q |
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| T |
14173086 |
attaccatgacctctcgctgcatatcttggagctggttctaaatgacgcagcagcggttcaacgtgatttttttgaaaagagaaaactttttcccactga |
14172987 |
T |
|
| Q |
228 |
tccagctcttaacagttgtgttaatgaattctatgaaacaactattaatgaattattaaaggcattgagtctgttgccaactgatcctcatactgcaaga |
327 |
Q |
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||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
14172986 |
tccagctctcaacagttgttataatgaattctatgtaacaactattaatgaattacaaaaggcattgattttgttgccaactgatcctcatactgcaaga |
14172887 |
T |
|
| Q |
328 |
gaaagtgcaacagct |
342 |
Q |
| |
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| T |
14172886 |
gatagtgcaatagct |
14172872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 31 - 342
Target Start/End: Complemental strand, 14177722 - 14177408
Alignment:
| Q |
31 |
ttgtatgaatctttatgcaatgagtacaac---cctagcataaatatcaaattatgcttgaaaattttgaaaactgacccaaaaatcacctccgcgacaa |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| || ||||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||| |
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| T |
14177722 |
ttgtatgaatctttatgcaatgagtacaacaaccctggccaaaatatccaattatgcttgaatattttgaaaactgacccaaaaatcacctcagccacaa |
14177623 |
T |
|
| Q |
128 |
attaccacgacctttccgagcatatcttgtatatggttctaaataacgcggcagcggttcaacttgattattttgaaaagagaaaactttttcctaccga |
227 |
Q |
| |
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||||||| ||||| || |||||||||| | ||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||| || || |
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| T |
14177622 |
attaccatgacctctcgctgcatatcttggagctggttctaaatgacgcagcagcggttcaacgtgatttttttgaaaagagaaaactttttcccactga |
14177523 |
T |
|
| Q |
228 |
tccagctcttaacagttgtgttaatgaattctatgaaacaactattaatgaattattaaaggcattgagtctgttgccaactgatcctcatactgcaaga |
327 |
Q |
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||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
14177522 |
tccagctctcaacagttgttataatgaattctatgtaacaactattaatgaattacaaaaggcattgattttgttgccaactgatcctcatactgcaaga |
14177423 |
T |
|
| Q |
328 |
gaaagtgcaacagct |
342 |
Q |
| |
|
|| ||||||| |||| |
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| T |
14177422 |
gatagtgcaatagct |
14177408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 14166355 - 14166227
Alignment:
| Q |
31 |
ttgtatgaatctttatgcaatgagtacaac---cctagcataaatatcaaattatgcttgaaaattttgaaaactgacccaaaaatcacctccgcgacaa |
127 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
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| T |
14166355 |
ttgtatgaatctttatgcaatgagtacaacaaccctagcagaaatatccaattatgcttgaatattttgaaaactgacccaaaaatcacctcagcgacga |
14166256 |
T |
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| Q |
128 |
attaccacgacctttccgagcatatcttg |
156 |
Q |
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||||||| ||||| ||| ||||||||||| |
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| T |
14166255 |
attaccatgacctctcccagcatatcttg |
14166227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 13559167 - 13559109
Alignment:
| Q |
82 |
tgcttgaaaattttgaaaactgacccaaaaatcacctccgcgacaaattaccacgacct |
140 |
Q |
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|||||||| |||| ||||||||||||||||||||||| || |||||||| || ||||| |
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| T |
13559167 |
tgcttgaatcttttaaaaactgacccaaaaatcacctcagccacaaattatcatgacct |
13559109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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