View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390_high_82 (Length: 350)
Name: NF1390_high_82
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_82 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 46167407 - 46167086
Alignment:
| Q |
1 |
gaaaatatcttcatctgtctgtatgcaaactccttgccaaggcaaattcttggacccgcctgtgttaggaaatcacattgatagtaaagttacatagaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46167407 |
gaaaatatcttcatctgtctgtatgcaaactccttgccaaggcaaattcttggacccgcctgtgttaggaaatcacattgatagtaaagttacatagaga |
46167308 |
T |
|
| Q |
101 |
tatattgtgagactgtttgaaagagcttatgaaaatatgatatagcttatatgaatacaatttgattttatctagtggtagaaattgcttatacagaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46167307 |
tatattgtgagactgtttgaaagagcttatgaaaatatgatatagcttatatgaatacaatttgattttatctagtggtagaaattgcttatacagaagc |
46167208 |
T |
|
| Q |
201 |
acgtatatgataagcgattatgcgacgacaagcacctaattaagttgttcatacctggaaggctgtgaacttaaaagggctctctctttgaaaatttcca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46167207 |
acgtatatgataagcgattatgcgacgacaagcgcctaattaagttgttcatacctggaaggctgtgaacttaaaagggctctctctttgaaaatttcca |
46167108 |
T |
|
| Q |
301 |
ttttcatcaagccatctctctg |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
46167107 |
ttttcatcaagccatctctctg |
46167086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 46160340 - 46160224
Alignment:
| Q |
203 |
gtatatgataagcgattatgcgacgacaagcacctaattaagttgttcatacctggaaggctgtgaacttaaaagggctctctctttgaaaatttccatt |
302 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
46160340 |
gtatatgataagcgattatgctac---aagcgcctaattaagttgttcatacctgaaaggctgtgaacttaaaagggctttctctctgaaaatttccatt |
46160244 |
T |
|
| Q |
303 |
ttcatcaagccatctctctg |
322 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
46160243 |
ttcatcaagccatctctctg |
46160224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 46160891 - 46160794
Alignment:
| Q |
1 |
gaaaatatcttcatctgtctgtatgcaaactccttgccaaggcaaattcttggacccgcctgtgttaggaaatcacattgatagtaaagttacataga |
98 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
46160891 |
gaaaatatcttcatctgtctgtatacaaactccttgccaagacaaattcttggacccgcctgtgttaggatgtcacattgacagtaaagttacataga |
46160794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 46182655 - 46182598
Alignment:
| Q |
1 |
gaaaatatcttcatctgtctgtatgcaaactccttgccaaggcaaattcttggacccg |
58 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
46182655 |
gaaaatatctttatatgtctgtatgcaaacttcttgccaaggcaaactcttggacccg |
46182598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 26516256 - 26516212
Alignment:
| Q |
179 |
tagaaattgcttatacagaagcacgtatatgataagcgattatgc |
223 |
Q |
| |
|
||||||| ||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
26516256 |
tagaaatagcttatacataagcacttatatgataagcgcttatgc |
26516212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 28283561 - 28283593
Alignment:
| Q |
105 |
ttgtgagactgtttgaaagagcttatgaaaata |
137 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
28283561 |
ttgtgagactgtttgaaagaacttatgaaaata |
28283593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14905 times since January 2019
Visitors: 8422