View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_91 (Length: 338)
Name: NF1390_high_91
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_91 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 99 - 300
Target Start/End: Original strand, 42093612 - 42093808
Alignment:
| Q |
99 |
aaaacaacatacaaaaggcaccggatatgagcggctaacctcaagacaatcaccaaaaaagtataagccccctgtcaatacacacacaccctactaatcc |
198 |
Q |
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| T |
42093612 |
aaaacaacatacaaaaggcaccggatatgagcggctaacctcaagacaatcaccaaaa--gtataagccccctgtcaatacac--acaccctaccaatcc |
42093707 |
T |
|
| Q |
199 |
cagctgcctgcccgaaagaccagcagcacagctgagggaaaaacggaaaaacagcaacgnnnnnnnncacaggaaaacaccaacagagaggttcctgaaa |
298 |
Q |
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| T |
42093708 |
cagctgcatacccgaaagaccagcagcacagctgagggaaaaacggaaaaacagcagcg-aaaaaaacacaggaaaacaccaacagagaggttcctgaaa |
42093806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 42094744 - 42094788
Alignment:
| Q |
294 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatat |
338 |
Q |
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| T |
42094744 |
tgaaaaataatagcagattcatatgttcatttcaaaaaccaatat |
42094788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 6774392 - 6774515
Alignment:
| Q |
105 |
acatacaaaaggcaccggatatgagcggctaacctcaagacaatcaccaaaaaagtataagccccctgtcaatacacacacac-cctactaatcccagct |
203 |
Q |
| |
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||||||||||||| | |||||| || ||||||||||||||||||||| ||| | ||||| |||||||||||||||| || | || |||||||| |||| |
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| T |
6774392 |
acatacaaaaggccctggatatatgcagctaacctcaagacaatcacc--aaatgaataag-cccctgtcaatacacagacccaccaactaatccaagct |
6774488 |
T |
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| Q |
204 |
gcctgcccgaaagaccagcagcacagc |
230 |
Q |
| |
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|||| ||| ||| |||||||||||||| |
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| T |
6774489 |
gcctacccaaaaaaccagcagcacagc |
6774515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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