View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_92 (Length: 338)
Name: NF1390_high_92
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_92 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 35946560 - 35946261
Alignment:
| Q |
30 |
aaaaatactgcaactggagctcaggaaacagtgagaatagtggatcagtgcgccaatggtggacttgacttagatgtgaatgtcttcaaacgaattgata |
129 |
Q |
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| T |
35946560 |
aaaaatactgcaactggagctcaggaaacagtgagaatagtggatcagtgcgccaatggtggacttgacttagatgtgaatgtcttcaaacgaattgata |
35946461 |
T |
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| Q |
130 |
ccaatggacagggttaccagaagggtcaccttatagttgattatgtctttgttaattgttaattaacgcgaatgaatccctctttgggatgataataaat |
229 |
Q |
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| T |
35946460 |
ccaatggacagggttaccagaagggtcaccttatagttgattatgtctttgttaattgttaattaacgcgaatgaatccctctttgggatgataataaat |
35946361 |
T |
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| Q |
230 |
tatattactgcctccttcaagaaaaagttatacactgcctaataatactataaataaaacaagcagtgctacatgtatacttggatgaatctatattctt |
329 |
Q |
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| T |
35946360 |
tatattactgcctccttcaagaaaaagttatacactgcctaataatactataaataaaacaagcagtgctacatgtatacttggatgaatctatattctt |
35946261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 35952703 - 35952508
Alignment:
| Q |
32 |
aaatactgcaactggagctcaggaaacagtgagaatagtggatcagtgcgccaatggtggacttgacttagatgtgaatgtcttcaaacgaattgatacc |
131 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||| || || ||||||||||| | ||||| ||||||||||||||||| | |||||||||| |
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| T |
35952703 |
aaatactgcaactggagctcaggcaacagtaagaatagtggaccaatgtgccaatggtgggttagacttggatgtgaatgtcttcaatcaaattgatacc |
35952604 |
T |
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| Q |
132 |
aatggacagggttaccagaagggtcaccttatagttgattatgtctttgttaattgttaattaacgcgaatgaatccctctttgggatgataataa |
227 |
Q |
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| T |
35952603 |
aatggacaaggttaccagcagggtcaccttacggttaactatgtctttgttaactgttaaataatgcgaattaatcactctttgtgatgataataa |
35952508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 32 - 187
Target Start/End: Complemental strand, 35939563 - 35939408
Alignment:
| Q |
32 |
aaatactgcaactggagctcaggaaacagtgagaatagtggatcagtgcgccaatggtggacttgacttagatgtgaatgtcttcaaacgaattgatacc |
131 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
35939563 |
aaatactgcaactggagctcaggtaacagtgagaatagtggaccaatgctccaacggtggacttgacttagatgtgaatgtcttcaatcaaattgatacc |
35939464 |
T |
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| Q |
132 |
aatggacagggttaccagaagggtcaccttatagttgattatgtctttgttaattg |
187 |
Q |
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| T |
35939463 |
aatggacagggcgttcagaatggtcaccttacagttaactatagctttgttaattg |
35939408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 35952499 - 35952435
Alignment:
| Q |
263 |
actgcctaataatactataaataaaacaagcagtgctacatgtatacttggatgaatctatattct |
328 |
Q |
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|||| |||||||||| ||||||||||||||| |||||||| ||| |||||||||||| |||||||| |
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| T |
35952499 |
actgtctaataataccataaataaaacaagcggtgctacacgta-acttggatgaatatatattct |
35952435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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