View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_96 (Length: 328)
Name: NF1390_high_96
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_96 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 71 - 299
Target Start/End: Original strand, 45236860 - 45237088
Alignment:
| Q |
71 |
tgtgtgtgttggattagcacctatagttgtaaatatgatggaaaatagccttcggtttgagtatgtagagggataatctagtgatgtggnnnnnnnnnnn |
170 |
Q |
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| T |
45236860 |
tgtgtgtgttggagtagcacctatagttgtaaatatgatggaaaatagccttcggtttgagtatgtagagagataatctagtgatgtggttttttattta |
45236959 |
T |
|
| Q |
171 |
nnnnnnnaatttggagtttaggtgggaatttatggttatgtagcttattcagccagtaaatttggcctccgtggtttagcagaagcattgcaacaagagg |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45236960 |
tttttttaatttggagtttaggtgggaatttatggttatgtagcttattcagccagtaaatttggcctccgtggtttagcagaagcattgcaacaagagg |
45237059 |
T |
|
| Q |
271 |
ttataggagataatattcatgcctctctg |
299 |
Q |
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||||||||||||||||||||| ||||||| |
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| T |
45237060 |
ttataggagataatattcatgtctctctg |
45237088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 7829972 - 7830082
Alignment:
| Q |
189 |
taggtgggaatttatggttatgtagcttattcagccagtaaatttggcctccgtggtttagcagaagcattgcaacaagaggttataggagataatattc |
288 |
Q |
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||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
7829972 |
taggtgggaatttatggctatgtagcttattcggctagtaaatttggcctccgtgggttagcagaggcattgcaacaagaggttattggagataatattc |
7830071 |
T |
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| Q |
289 |
atgcctctctg |
299 |
Q |
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||| ||||||| |
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| T |
7830072 |
atgtctctctg |
7830082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 7825355 - 7825396
Alignment:
| Q |
76 |
gtgttggattagcacctatagttgtaaatatgatggaaaata |
117 |
Q |
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|||||||| ||||||||||||||||||||||| || |||||| |
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| T |
7825355 |
gtgttggagtagcacctatagttgtaaatatggtgaaaaata |
7825396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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