View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_101 (Length: 343)
Name: NF1390_low_101
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_101 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 44730606 - 44730514
Alignment:
| Q |
98 |
tcttgggagaagattctctttagtttttctgc-tctcactttttctcatgtaatcactatccttaaaacccatttatccttttattttttaat |
189 |
Q |
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| T |
44730606 |
tcttgggagaagattctctttagtttttctgcctctcactttttctcatgtaatcactatccttaaaacccatttatccttttattttttaat |
44730514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 44730513 - 44730435
Alignment:
| Q |
256 |
actccaaacccatttttcttattttatttgaaatgtaaccttgaaaaaagtatttaaactattttcaatatagaataat |
334 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44730513 |
actccaaacccaattttcttattttatttgaaatgtaaccttgaaaaaagcatttaaactattttcaatatagaataat |
44730435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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