View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390_low_11 (Length: 710)
Name: NF1390_low_11
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_11 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 91 - 691
Target Start/End: Complemental strand, 16941759 - 16941157
Alignment:
| Q |
91 |
attggcaaagggaaaaattattattgaagtgacattaatgaccattttacgatattgctcttgatcgagaaagcctttgaacttttgtcgttttaaatca |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
16941759 |
attggcaaagggaaaaattattattgaagtgacattaatgaccattttacgatattgctcttgatcgagaaagcctttaaacttttgtcgttttagatca |
16941660 |
T |
|
| Q |
191 |
tataaactcaaacttttacaatagggctctatacatctcatgagattaaaaacaatatttcattaaaatgaaattctattttgcttacataataggctgt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16941659 |
tataaactcaaacttttacaatagggctctatacatctcatgagattaaaaacaatatttcattaaaatgaaattctattttgcttacataataggctgt |
16941560 |
T |
|
| Q |
291 |
gacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagatttg |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16941559 |
gacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagattta |
16941460 |
T |
|
| Q |
391 |
tctaaggtcaggctgagactctgcccattttcaaggactttggcacgactctcaccccatgttatttcaaaatctttcataaaattaccagcagatgcat |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16941459 |
tctaaggtcaggctgagactctgcccattttcaaggactttggcacgactctcaccccatgttatttcaaaatctttcataaaattaccagccgatgcat |
16941360 |
T |
|
| Q |
491 |
acaccaaaaaagtggcaacaagaaggaggaataaaccaatatcacccttaaatttcatttcataacaaattttccaagcaatgagttagggttggttgat |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16941359 |
acaccaaaaaagtggcaacaagaaggaggaataaaccaatatcacccttaaatttcatttcataacaaattttccaagcaatgagttagggttggttgat |
16941260 |
T |
|
| Q |
591 |
tggaatactattgcaaccaatgttatatatataga--gagaaatttagaggacacatgccaagtgaaatatttgatgaatgcatgtaaagttttggaggt |
688 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16941259 |
tggaatactattgcaaccaatgttatatatatagagagagaaatttagaggacacatgccaagtgaaatatttgatgaatgcatccaaagttttggaggt |
16941160 |
T |
|
| Q |
689 |
att |
691 |
Q |
| |
|
||| |
|
|
| T |
16941159 |
att |
16941157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 91 - 691
Target Start/End: Complemental strand, 17012424 - 17011822
Alignment:
| Q |
91 |
attggcaaagggaaaaattattattgaagtgacattaatgaccattttacgatattgctcttgatcgagaaagcctttgaacttttgtcgttttaaatca |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
17012424 |
attggcaaagggaaaaattattattgaagtgacattaatgaccattttacgatattgctcttgatcgagaaagcctttaaacttttgtcgttttagatca |
17012325 |
T |
|
| Q |
191 |
tataaactcaaacttttacaatagggctctatacatctcatgagattaaaaacaatatttcattaaaatgaaattctattttgcttacataataggctgt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17012324 |
tataaactcaaacttttacaatagggctctatacatctcatgagattaaaaacaatatttcattaaaatgaaattctattttgcttacataataggctgt |
17012225 |
T |
|
| Q |
291 |
gacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagatttg |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17012224 |
gacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagattta |
17012125 |
T |
|
| Q |
391 |
tctaaggtcaggctgagactctgcccattttcaaggactttggcacgactctcaccccatgttatttcaaaatctttcataaaattaccagcagatgcat |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17012124 |
tctaaggtcaggctgagactctgcccattttcaaggactttggcacgactctcaccccatgttatttcaaaatctttcataaaattaccagccgatgcat |
17012025 |
T |
|
| Q |
491 |
acaccaaaaaagtggcaacaagaaggaggaataaaccaatatcacccttaaatttcatttcataacaaattttccaagcaatgagttagggttggttgat |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17012024 |
acaccaaaaaagtggcaacaagaaggaggaataaaccaatatcacccttaaatttcatttcataacaaattttccaagcaatgagttagggttggttgat |
17011925 |
T |
|
| Q |
591 |
tggaatactattgcaaccaatgttatatatataga--gagaaatttagaggacacatgccaagtgaaatatttgatgaatgcatgtaaagttttggaggt |
688 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17011924 |
tggaatactattgcaaccaatgttatatatatagagagagaaatttagaggacacatgccaagtgaaatatttgatgaatgcatccaaagttttggaggt |
17011825 |
T |
|
| Q |
689 |
att |
691 |
Q |
| |
|
||| |
|
|
| T |
17011824 |
att |
17011822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 52590574 - 52590456
Alignment:
| Q |
274 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagc |
373 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||| | ||||| || ||||||||||||||||| |||||||||||||||| |||||||||||| | |
|
|
| T |
52590574 |
cttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaatc |
52590475 |
T |
|
| Q |
374 |
cagagccagaagatttgtc |
392 |
Q |
| |
|
|||||||||| | |||||| |
|
|
| T |
52590474 |
cagagccagatgctttgtc |
52590456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 274 - 383
Target Start/End: Complemental strand, 53492512 - 53492403
Alignment:
| Q |
274 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagc |
373 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| |||| |||||||| |||||||| |||||||| ||||| | ||| |||| |||||| |||||| |
|
|
| T |
53492512 |
cttacataataggcagtgacagtgccagcagagttgccaggaacaagtttaagttgcatatcaattttgccaaaaaggtattcatttttggattgaaagc |
53492413 |
T |
|
| Q |
374 |
cagagccaga |
383 |
Q |
| |
|
| || ||||| |
|
|
| T |
53492412 |
ctgaaccaga |
53492403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 53501949 - 53501876
Alignment:
| Q |
274 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaa |
347 |
Q |
| |
|
||||| ||||| || |||||| ||||||||||||| |||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
53501949 |
cttacgtaatatgcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaatcttcccaaa |
53501876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 53498826 - 53498708
Alignment:
| Q |
274 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagc |
373 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| || | ||||| || | ||||| |||||||| ||||| ||||| |||| |||||| |||||| |
|
|
| T |
53498826 |
cttacataataggcagtgacagtgccagcagagtttcctggaacaagcttaatctgcatatcaattttgccaaataagtattcatttttggattgaaagc |
53498727 |
T |
|
| Q |
374 |
cagagccagaagatttgtc |
392 |
Q |
| |
|
| || ||||| | |||||| |
|
|
| T |
53498726 |
ctgaaccagaggctttgtc |
53498708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 272 - 392
Target Start/End: Complemental strand, 37188476 - 37188356
Alignment:
| Q |
272 |
tgcttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaa |
371 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| |||| |||||||| || ||||| |||||||| ||||| | ||| |||| |||||| |||| |
|
|
| T |
37188476 |
tgcttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaa |
37188377 |
T |
|
| Q |
372 |
gccagagccagaagatttgtc |
392 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
37188376 |
accagagccagaggatttgtc |
37188356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 350
Target Start/End: Original strand, 40031102 - 40031176
Alignment:
| Q |
276 |
tacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaa |
350 |
Q |
| |
|
||||||||| || ||||||||||| |||||||| || | |||||||||| ||||||||||| | | |||||||| |
|
|
| T |
40031102 |
tacataatatgcagtgacaatgcctgcagagttccctggcacaagtttgatttgcatgtcaaatctaccaaacaa |
40031176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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