View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_116 (Length: 318)
Name: NF1390_low_116
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_116 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 10389951 - 10389675
Alignment:
| Q |
13 |
gctgttgcacaaaggaagactaaaaatccaaacaatagtcccttcacttctgagaggaagaaatctaataacatatatccataaagcattatcacaagta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10389951 |
gctgttgcacaaaggaagactaaaaatccaaacaatagtcccttcacttctgagaggaagaaatctaataacatatatccataaagcattatcacaagta |
10389852 |
T |
|
| Q |
113 |
ccaccactgtccatgccaccctctgcatcacaaaatttataaagttaaatatactcatactcttgaataattttttatcatttagaactcaaagttttgt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10389851 |
ccaccactgtccatgccaccctctgcatcacaaaatttataaagttaaatatactcatactcttgaataatttttgatcatttagaactcaaagttttgt |
10389752 |
T |
|
| Q |
213 |
ctaaaattatttaattacctttgattttttaaacaccaaagtataagaatttcaaataaaaactaactatattttag |
289 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10389751 |
ctaaaattatttaattacctttgattttttaaacaccaaagtataagaatttcaaataaaaactaactatattttag |
10389675 |
T |
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