View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_low_121 (Length: 312)

Name: NF1390_low_121
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_low_121
NF1390_low_121
[»] chr5 (4 HSPs)
chr5 (1-210)||(656698-656907)
chr5 (102-161)||(12842972-12843031)
chr5 (107-161)||(37022666-37022720)
chr5 (110-161)||(24092098-24092149)
[»] chr4 (5 HSPs)
chr4 (15-97)||(3896085-3896167)
chr4 (15-95)||(3144996-3145076)
chr4 (107-161)||(14027054-14027108)
chr4 (107-161)||(6746689-6746743)
chr4 (107-154)||(8724775-8724822)
[»] scaffold0015 (2 HSPs)
scaffold0015 (106-161)||(29526-29581)
scaffold0015 (107-161)||(24211-24265)
[»] chr8 (4 HSPs)
chr8 (106-161)||(86508-86563)
chr8 (106-161)||(91825-91880)
chr8 (106-161)||(19802979-19803034)
chr8 (107-161)||(29010782-29010836)
[»] chr7 (4 HSPs)
chr7 (106-161)||(11716628-11716683)
chr7 (107-161)||(13167037-13167091)
chr7 (108-161)||(11711383-11711436)
chr7 (106-161)||(13160581-13160636)
[»] chr6 (5 HSPs)
chr6 (106-161)||(16777801-16777856)
chr6 (106-161)||(32703873-32703928)
chr6 (107-161)||(16772466-16772520)
chr6 (107-161)||(32708250-32708304)
chr6 (107-159)||(26243701-26243753)
[»] chr3 (11 HSPs)
chr3 (106-161)||(4100097-4100152)
chr3 (106-161)||(5383349-5383404)
chr3 (106-161)||(6806583-6806638)
chr3 (107-161)||(5378014-5378068)
chr3 (107-161)||(13719155-13719209)
chr3 (106-161)||(13723051-13723106)
chr3 (106-161)||(4099737-4099792)
chr3 (170-210)||(5378234-5378274)
chr3 (107-161)||(2185446-2185500)
chr3 (109-158)||(23619432-23619481)
chr3 (170-210)||(5383570-5383610)
[»] chr1 (15 HSPs)
chr1 (106-161)||(2797004-2797059)
chr1 (106-161)||(14471543-14471598)
chr1 (106-161)||(14476906-14476961)
chr1 (106-161)||(23200390-23200445)
chr1 (107-161)||(2790575-2790629)
chr1 (107-161)||(23202759-23202813)
chr1 (107-161)||(39170182-39170236)
chr1 (110-161)||(42375365-42375416)
chr1 (106-161)||(21010395-21010450)
chr1 (170-210)||(14471763-14471803)
chr1 (170-210)||(14477126-14477166)
chr1 (170-210)||(39169977-39170017)
chr1 (107-160)||(394763-394816)
chr1 (109-160)||(14632655-14632706)
chr1 (107-142)||(42377395-42377430)
[»] chr2 (2 HSPs)
chr2 (107-161)||(20925392-20925446)
chr2 (18-92)||(44046416-44046490)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 656698 - 656907
Alignment:
Q  1 tcattgattgcaaagtattaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaattacatac 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656698 tcattgattgcaaagtattaccagggttctgttggatggagatccacagaatttactctttctgatctttgagcaagctttcgctgatcaaattacatac 656797  T
Q  101 acaccatggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaagnnnnnnnncaatgaggtaagggatgatgtaagtgacctt 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  656798 acaccatggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaagttttttttcaatgaggtaagggatgatgtaagtgacctt 656897  T
Q  201 gagcctatga 210  Q
    ||||||||||    
T  656898 gagcctatga 656907  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 12843031 - 12842972
Alignment:
Q  102 caccatggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12843031 caccttggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 12842972  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 37022666 - 37022720
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37022666 tggctaagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 37022720  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 24092098 - 24092149
Alignment:
Q  110 ctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  24092098 ctcagaaactaagagagaatccactctctaactctcaaatgagaaactcaag 24092149  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 3896167 - 3896085
Alignment:
Q  15 gtattaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaattaca 97  Q
    ||||||||| |||||| ||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  3896167 gtattaccatggttctgttggatgtagatccacagactttactctttctgatctttgcgcaagctttcgctgatcaaattaca 3896085  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 3144996 - 3145076
Alignment:
Q  15 gtattaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaatta 95  Q
    ||||||||| |||||| ||||||| ||||||||| | || ||||||||||||||||| |||||||||||||||||||||||    
T  3144996 gtattaccatggttctgttggatgtagatccacagacttcactctttctgatctttgcgcaagctttcgctgatcaaatta 3145076  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 14027108 - 14027054
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14027108 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14027054  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 6746689 - 6746743
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  6746689 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaacgcaag 6746743  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 8724822 - 8724775
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaa 154  Q
    ||||||| || |||||||||||| |||| |||||||||||||||||||    
T  8724822 tggctcaaaagccaagagagaatccactatctaactctcaaatgagaa 8724775  T

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Target: scaffold0015 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 29526 - 29581
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29526 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 29581  T

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Target: scaffold0015; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 24211 - 24265
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24211 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 24265  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 86563 - 86508
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  86563 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 86508  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 91880 - 91825
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  91880 atggctcataaaccaagagagaatccactctctaactctcaaatgagaaactcaag 91825  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 19803034 - 19802979
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  19803034 atggctcagaaaccaagagagaatccactctctaactctcaaattagaaactcaag 19802979  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 29010782 - 29010836
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  29010782 tggctcagaaatcaagagagaatccactctctaactctcaaatgagaaactcaag 29010836  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 11716683 - 11716628
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11716683 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 11716628  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 13167091 - 13167037
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13167091 tggctcagaaatcaagagagaattcactctctaactctcaaatgagaaactcaag 13167037  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 11711436 - 11711383
Alignment:
Q  108 ggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11711436 ggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 11711383  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 13160636 - 13160581
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  13160636 atggctcagaaacgaagagagaatccactctctaactctcatatgagaaactcaag 13160581  T

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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 16777801 - 16777856
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16777801 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 16777856  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 32703928 - 32703873
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  32703928 atggctcagaaaccaagagagaatccactctataactctcaaatgagaaactcaag 32703873  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 16772466 - 16772520
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  16772466 tggctcagaaaccaatagagaatccactctctaactctcaaatgagaaactcaag 16772520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 32708304 - 32708250
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  32708304 tggctcagaaactaagagagaatccactctctaactctcaaatgagaaactcaag 32708250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 26243753 - 26243701
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactca 159  Q
    |||||||||||| ||||||||  ||| | ||||||||| ||||||||||||||    
T  26243753 tggctcagaaactaagagagacctcattttctaactcttaaatgagaaactca 26243701  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 4100152 - 4100097
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4100152 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 4100097  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 5383349 - 5383404
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5383349 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 5383404  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 6806583 - 6806638
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6806583 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 6806638  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 5378014 - 5378068
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5378014 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 5378068  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 13719155 - 13719209
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13719155 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 13719209  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 13723051 - 13723106
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  13723051 atggctcagaaaccaagagagaatccactctctaactatcaaatgagaaactcaag 13723106  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 4099737 - 4099792
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  4099737 atggctcataaaccaagagagaatccactctctaactctcaaaagagaaactcaag 4099792  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 5378234 - 5378274
Alignment:
Q  170 caatgaggtaagggatgatgtaagtgaccttgagcctatga 210  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5378234 caatgaggtaagggatgatgtaagtgaccttgagcctatga 5378274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 2185500 - 2185446
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||    
T  2185500 tggctcagaaatcaagagagaatccattctctaactttcaaatgagaaactcaag 2185446  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 23619481 - 23619432
Alignment:
Q  109 gctcagaaaccaagagagaattcactctctaactctcaaatgagaaactc 158  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  23619481 gctcagaaaccaagagagaatccactctattactctcaaatgagaaactc 23619432  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 5383570 - 5383610
Alignment:
Q  170 caatgaggtaagggatgatgtaagtgaccttgagcctatga 210  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  5383570 caatgaggtaagggatgatgtaagtgaccttgagcttatga 5383610  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 2797004 - 2797059
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2797004 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 2797059  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 14471543 - 14471598
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14471543 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14471598  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 14476906 - 14476961
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14476906 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14476961  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 23200445 - 23200390
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23200445 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 23200390  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 2790575 - 2790629
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2790575 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 2790629  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 23202813 - 23202759
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23202813 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 23202759  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 39170236 - 39170182
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39170236 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 39170182  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 42375416 - 42375365
Alignment:
Q  110 ctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42375416 ctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 42375365  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 21010395 - 21010450
Alignment:
Q  106 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  21010395 atggctcagaaaccaagagagtatccactctctaactctgaaatgagaaactcaag 21010450  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 14471763 - 14471803
Alignment:
Q  170 caatgaggtaagggatgatgtaagtgaccttgagcctatga 210  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14471763 caatgaggtaagggatgatgtaagtgaccttgagcctatga 14471803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 14477126 - 14477166
Alignment:
Q  170 caatgaggtaagggatgatgtaagtgaccttgagcctatga 210  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14477126 caatgaggtaagggatgatgtaagtgaccttgagcctatga 14477166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 39170017 - 39169977
Alignment:
Q  170 caatgaggtaagggatgatgtaagtgaccttgagcctatga 210  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39170017 caatgaggtaagggatgatgtaagtgaccttgagcctatga 39169977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 394763 - 394816
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaa 160  Q
    ||||||||||| |||||||||||||||||| ||| | |||||||||||||||||    
T  394763 tggctcagaaatcaagagagaattcactctgtaattttcaaatgagaaactcaa 394816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 14632655 - 14632706
Alignment:
Q  109 gctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaa 160  Q
    ||||| |||| |||||||||| |||||| ||||| |||||||||||||||||    
T  14632655 gctcataaacgaagagagaatccactctttaactttcaaatgagaaactcaa 14632706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 142
Target Start/End: Complemental strand, 42377430 - 42377395
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaact 142  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42377430 tggctcagaaaccaagagagaatccactctctaact 42377395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 20925392 - 20925446
Alignment:
Q  107 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20925392 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 20925446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 44046490 - 44046416
Alignment:
Q  18 ttaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaa 92  Q
    |||||| |||||  ||||||| ||||||||| | || |||||||||||||| || |||||||| |||||||||||    
T  44046490 ttaccatggttcagttggatgtagatccacacatttcactctttctgatctctgcgcaagcttacgctgatcaaa 44046416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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