View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_125 (Length: 296)
Name: NF1390_low_125
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_125 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 9829479 - 9829219
Alignment:
| Q |
9 |
atcataggggaaagcatcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttat |
108 |
Q |
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| T |
9829479 |
atcataagggtaagcatctgcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttat |
9829380 |
T |
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| Q |
109 |
tggtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattct |
208 |
Q |
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| T |
9829379 |
tggtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattct |
9829280 |
T |
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| Q |
209 |
aattttcaagatgtatttgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctg |
269 |
Q |
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| T |
9829279 |
aattttcaagatgtatctgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctg |
9829219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 9755993 - 9755767
Alignment:
| Q |
39 |
caacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttgatgcatctgattgtga |
138 |
Q |
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| T |
9755993 |
caacaaacgatgatgatgaactagaagaggatttgacatacagtgaggaaggaaacatgaatgattttattgttgatgattttgatgcatctgattgtga |
9755894 |
T |
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| Q |
139 |
agacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatttgatatgcaaggt |
238 |
Q |
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| T |
9755893 |
aggcatgtctaatacttcacaagatgagtctaatagtgacgcagaat----tactagtaacaagaactcttattttcaagatgtgtctgatatgcaaggc |
9755798 |
T |
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| Q |
239 |
agtcaatgtaattctctgtcaacgtgttctg |
269 |
Q |
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| T |
9755797 |
agtgaatatatttctcagtcaacatgttctg |
9755767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 261
Target Start/End: Complemental strand, 9814122 - 9813937
Alignment:
| Q |
73 |
gacatacagtgaggaaggaaacaatattgattttattggtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaat |
172 |
Q |
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| T |
9814122 |
gacacacaatgaggaagaaaacaatagtgattttattg---attattttgatgcatctgattgtgaaggcatgtctaataattcacgagatgagtctagc |
9814026 |
T |
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| Q |
173 |
agtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatttgatatgcaaggtagtcaatgtaattctctgtcaac |
261 |
Q |
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| T |
9814025 |
agtgacgcagaatctagttcgtgtagcaaggattcttatttgcaagatgtatctgatatgcaaggtagtggaagtatttctctgtcaac |
9813937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 9708628 - 9708475
Alignment:
| Q |
24 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
123 |
Q |
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||||||| |||||||||| ||||||||||||||| ||| || ||||| | |||| |||||||||| ||| || ||||||||||| ||||||| |||| |
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| T |
9708628 |
atcagcagagtattccaaaaaatgatgatgatgacctaggagtggatttgtcatatagtgaggaagataaccttagtgattttattgttgatgatgttga |
9708529 |
T |
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| Q |
124 |
tgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtga |
177 |
Q |
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| T |
9708528 |
tgcatctgattgtgaagacatatctgataagtcacaggaagagtctaatagtga |
9708475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 9755380 - 9755264
Alignment:
| Q |
24 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
123 |
Q |
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|||||||||||||||||||||||||||||| ||||| | |||||| | || | ||||||||||||||| | | |||||||| |||||||||||| |
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| T |
9755380 |
atcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcacaaagtgaggaaggaaacttgaaaggttttattgttgatgattttga |
9755281 |
T |
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| Q |
124 |
tgcatctgattgtgaag |
140 |
Q |
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| T |
9755280 |
tttatctggttgtgaag |
9755264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 9828855 - 9828739
Alignment:
| Q |
24 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
123 |
Q |
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|||||||||||||||||||||||||||||| ||||| | |||||| | || | ||||||||||||||| | | |||||||| |||||||||||| |
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| T |
9828855 |
atcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcacaaagtgaggaaggaaactcgaaaggttttattgttgatgattttga |
9828756 |
T |
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| Q |
124 |
tgcatctgattgtgaag |
140 |
Q |
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| T |
9828755 |
tgtatctagttgtgaag |
9828739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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