View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_126 (Length: 293)
Name: NF1390_low_126
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_126 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 13879061 - 13879345
Alignment:
| Q |
9 |
caacaaaatagaaggcagattaagttgcatcaactagctatataattataatagcaaatgaaattgttaatcatatatttataatattgattgatagcaa |
108 |
Q |
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| T |
13879061 |
caacaaaatagaaggcagattaagttgcatcaactagctatataattataatagcaaatgaaattgttaatcatatatttataatattgattgatagcaa |
13879160 |
T |
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| Q |
109 |
ttggtaattaatgtcaaatccagaaattggtacaaacagaacagaacactaattaactaactaaatagctttttagatctcaaatacatgcaaactaatt |
208 |
Q |
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| T |
13879161 |
ttggtaattaatgtcaaatccagaaattggtacaaacagaacagaacactaattaactaactaaatagctttttagatctcaaatacatgcaaactaatt |
13879260 |
T |
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| Q |
209 |
catcatttaaaatagtaactaaaaaactacttctctgttcatccctccctcttttaagtgaaacctaaaacatatctagatgaga |
293 |
Q |
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| T |
13879261 |
catcatttaaaatagtaactaaaatactacttctctgttcatccctccctcttttaagtgaaacctaaaacatagctagatgaga |
13879345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 13884996 - 13885034
Alignment:
| Q |
76 |
taatcatatatttataatattgattgatagcaattggta |
114 |
Q |
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| T |
13884996 |
taatcatatatttataatattgattgataccaattggta |
13885034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 13885075 - 13885159
Alignment:
| Q |
156 |
actaattaactaactaaatagctttttagatctcaaatacat---gcaaactaattcatcatttaaaatagtaactaaaaaacta |
237 |
Q |
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| T |
13885075 |
actaattaaccaactaaatccctttttagatctctaatacattcatcatactaattaagcatttaaaatagcaactaaaatacta |
13885159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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