View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390_low_128 (Length: 286)
Name: NF1390_low_128
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_128 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 32210023 - 32210299
Alignment:
| Q |
1 |
gttaaatcataacataataacatcaaagaagatggaccatctatagtctgtattgtagtgtatnnnnnnnnnnnnnnnntgaacaaccaaacgtgttgan |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32210023 |
gttaaatcataacataataacatcaaagaagatggaccatctatagtctgtattgtagtgtataaaaaataaaataaaatgaacaaccaaacgtgttgat |
32210122 |
T |
|
| Q |
101 |
nnnnnngtatttgtatgttggttgctaataaagacatatttctaaagacagttataccagacacattttcttatgcctatttaattacagatagatccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32210123 |
ttttttgtatttgtatgttggttgctaataaagacatatttctaaagacagttataccagacacattttcttatgcctatttaattacagatagatccaa |
32210222 |
T |
|
| Q |
201 |
taaaatattaaacaagacggtggataaggtatttttatttttgatgtcactatgactaaataaatattaagtataat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32210223 |
taaaatattaaacaagacggtggataaggtatttttatttttgatgtcactatgactaaataaatatcaagtataat |
32210299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 11403 times since January 2019
Visitors: 8091