View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_130 (Length: 282)
Name: NF1390_low_130
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_130 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 19312543 - 19312733
Alignment:
| Q |
47 |
gaatgagagtacgtctattatgggtgttcaagccgtgttgggcacatgtaaatatcttggcctcccgtcaatggtgggaagagatcgtaattttgtcttt |
146 |
Q |
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| T |
19312543 |
gaatgagagtacgtctattatgggtgttcaagccgtgttgggcacatgtaaatatcttggcctcccttcaatggtgggaagagatcgtaattctgtcttt |
19312642 |
T |
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| Q |
147 |
tcttatatcaaataccgtgtttggcnnnnnnntcaattcatgaagtagcaagtgtttctcaaaagtagggcgagaggtgatgattaaatct |
237 |
Q |
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| T |
19312643 |
tcttatatcaaagaccgtttttggcaaaaaaatcaattcttggagtagcaagtgtctctcaaaagcagggcgagaggtgatgattaaatct |
19312733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 8528549 - 8528660
Alignment:
| Q |
60 |
tctattatgggtgttcaagccgtgttgggcacatgtaaatatcttggcctcccgtcaatggtgggaagagatcgtaattttgtcttttcttatatcaaat |
159 |
Q |
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| T |
8528549 |
tctataatgggtgttcaagctgttttgggtacaagtaaataccttggcctcccgtcaatggtgggaagagatcgaaatgctattttctcttatatcaaag |
8528648 |
T |
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| Q |
160 |
accgtgtttggc |
171 |
Q |
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| T |
8528649 |
accgtgtatggc |
8528660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 5603001 - 5602932
Alignment:
| Q |
60 |
tctattatgggtgttcaagccgtgttgggcacatgtaaatatcttggcctcccgtcaatggtgggaagagatcg |
133 |
Q |
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| T |
5603001 |
tctataatgggtgttcaagctgttttgggcacaagtaaataccttgacctcccg----tggtgggaagagatcg |
5602932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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