View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_131 (Length: 281)
Name: NF1390_low_131
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_131 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 23423192 - 23423009
Alignment:
| Q |
58 |
gatataactgatgaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaaccaacaa |
157 |
Q |
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| T |
23423192 |
gatataactgatgaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaacaaacaa |
23423093 |
T |
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| Q |
158 |
agtttgtttttgaacaagttaccattttgttaacttcttgatgcaaatagggcatagagtgtttaactgtgagtttcatctgtg |
241 |
Q |
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| T |
23423092 |
agtttgtttttgaacaagttaccattttgttaacttcttgatgcaaatagggtatagagtgtttaactgtgagtttcatttgtg |
23423009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 549436 - 549619
Alignment:
| Q |
58 |
gatataactgatgaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaaccaacaa |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
549436 |
gatataactgatgaagtagcgaaaatataagacataaggttgaattttttagcgatgtcgattacatcacttgagaaaagatcaaaaaccaaaccaacaa |
549535 |
T |
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| Q |
158 |
agtttgtttttgaacaagttaccattttgttaacttcttgatgcaaatagggcatagagtgtttaactgtgagtttcatctgtg |
241 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
549536 |
agtttgtttttgaacaagttacgattttgttaacttcttgatgcaaatagggtatagagtgtttaactgtgagtttcatttgtg |
549619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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