View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_139 (Length: 267)
Name: NF1390_low_139
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_139 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 49080453 - 49080197
Alignment:
| Q |
2 |
taatctgcctattcttaacacttgtatttttcttcctattttctcatccaaaggttctccgttccccattactatgcctttaaacatgcttttaattctt |
101 |
Q |
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| T |
49080453 |
taatctgcctattcttaacacttgtatttttcttcctattttctcatccaaaggttctctgttccccattactatgcctttaaacatgcttttaattctt |
49080354 |
T |
|
| Q |
102 |
gacaatggggtacttctttttgttcaccatctgttatcattttctcctgttctaagtttattgaaaacatgttttcttttccaattaatttgttgggtac |
201 |
Q |
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| T |
49080353 |
gacaatggggtacttctttttgttcaccatctgttatcattttctcctgttctaagtttattgaaagcatgttttcttttccaattaatttgttgggtac |
49080254 |
T |
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| Q |
202 |
atattttttaagtgatggatcacagatggaggtgaaaatatgcagaacaagaataat |
258 |
Q |
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| T |
49080253 |
atattttttaagtgatggatcacagatggaggtgaaaatatgtagaacaagaataat |
49080197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 31547613 - 31547435
Alignment:
| Q |
79 |
ctttaaacatgcttttaattcttgacaatggggtacttctttttgttcaccatctgttatcattttctcctgttctaagttta---ttgaaaacatgttt |
175 |
Q |
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| T |
31547613 |
ctttaaagatgtttttcattcttgacactagggtacttctttttgttcaatatcccttatcattttctccatttgcaagtttaaagttgaaaacatattt |
31547514 |
T |
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| Q |
176 |
tcttttccaattaatttgttgggtacatattttttaagtgatggatcacagatggaggtgaaaatatgcagaacaagaa |
254 |
Q |
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| T |
31547513 |
tatgttccaattaatttgtttggtaaatatgttttaaatgagggatcacaaatggaggtgacaatgtgtagaacaagaa |
31547435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 236
Target Start/End: Original strand, 46444403 - 46444552
Alignment:
| Q |
93 |
ttaattcttgacaatggggtacttctt---tttgttcaccatctgttatcattttctcctgttctaagttta---ttgaaaacatgttttcttttccaat |
186 |
Q |
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||||||||||||| | ||||||||||| |||||||| ||| |||||||| ||||| || ||||||| ||| ||||||||||||| ||||||| |
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| T |
46444403 |
ttaattcttgacactagggtacttcttaattttgttcaatatcacttatcattatctccaattgcaagtttaaatttgcaaacatgttttctattccaat |
46444502 |
T |
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| Q |
187 |
taatttgttgggtacatattttttaagtgatggatcacagatggaggtga |
236 |
Q |
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||||||||| || | |||| |||||||||| |||||||| |||||||||| |
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| T |
46444503 |
taatttgtttggaaaatatgttttaagtgagggatcacaaatggaggtga |
46444552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 258
Target Start/End: Complemental strand, 51292194 - 51292031
Alignment:
| Q |
98 |
tcttgacaatggggtacttctttttgttcaccatctgttatcattttctcctgttctaagtttat---tgaaaacatgttttcttttccaattaatttgt |
194 |
Q |
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|||||||| ||| ||||||||||||||||| |||| |||||||||||||| | |||||||| |||||||||||||| | ||||||||||||||| |
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| T |
51292194 |
tcttgacactggagtacttctttttgttcaacatcccttatcattttctccaatcgcaagtttatagttgaaaacatgttttatgttccaattaatttgt |
51292095 |
T |
|
| Q |
195 |
tgggtacatattttttaagtgatggatcacagatggaggtgaaaatatgcagaacaagaataat |
258 |
Q |
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|| ||| |||| |||||||||| |||| ||| |||||||||| ||| || ||||||| |||||| |
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| T |
51292094 |
tgagtaaatatgttttaagtgagggattacaaatggaggtgacaatgtgtagaacaaaaataat |
51292031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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