View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_144 (Length: 264)
Name: NF1390_low_144
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_144 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 264
Target Start/End: Original strand, 25412172 - 25412408
Alignment:
| Q |
30 |
tttattttattgttattttaataaaatcatcaacacaaaatgatggtttattccaagatagtctaaacttttagttacatcatgta--cattgcacttag |
127 |
Q |
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| T |
25412172 |
tttattttattgttattttaataaaatcatcaacacaaaatgatggtttattccaagatagtctaaacttttagttacatcatgtatacattgcacttag |
25412271 |
T |
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| Q |
128 |
gttggtacattgtacactgttctactggttcctgtctatattgggtgtaagatcttgtatttacgtttcgtattttatgatttctagttaaaatggattt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25412272 |
gttggtacattgtacactgttctactggttcctgtctatattgggtgtaagatcttgtatttacgtttcgtattttatgatttctagttaaaatggattt |
25412371 |
T |
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| Q |
228 |
acgtttcgtatcttatgatgactctaacttttatgtc |
264 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
25412372 |
acgtttcgtatcttatgatgactctaacttttatgtc |
25412408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 19488028 - 19487994
Alignment:
| Q |
30 |
tttattttattgttattttaataaaatcatcaaca |
64 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
19488028 |
tttattttattgttattttaataaaatcatcaaca |
19487994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 14917040 - 14917007
Alignment:
| Q |
31 |
ttattttattgttattttaataaaatcatcaaca |
64 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
14917040 |
ttattttattgttattttaataaaatcatcaaca |
14917007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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