View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_147 (Length: 255)
Name: NF1390_low_147
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_147 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 1530151 - 1530396
Alignment:
| Q |
1 |
tggattctattgagtggtgaaattgtgattgattattgagatgttagttatttttagctgtatataatttgtgttttttggaatttggtatttgattgat |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530151 |
tggattctattgagtggtgaaatggtgattgattattgagatgttagttatttttagctgtatataatttgtgttttttggaatttggtatttgattgat |
1530250 |
T |
|
| Q |
101 |
atgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattatgaattagttaggatggatttgcagaataatatgcactattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530251 |
atgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattatgaattagttaggatggatttgcagaataatatgcactattc |
1530350 |
T |
|
| Q |
201 |
ttatatttatgttcatttcaatttggcctaatttttgcagaataat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530351 |
ttatatttatgttcatttcaatttggcctaatttttgcagaataat |
1530396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 22476557 - 22476322
Alignment:
| Q |
8 |
tattgagtggtgaaattgtgattgattattgagatgttagttatttttagctgtatataatttgtgtttttt-ggaatttggtatttgattgatatgtac |
106 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
22476557 |
tattgagtggtgaaatggtgattggttattgagatgttagttatttttagttgtatataatttttgtttttttggaatttggtatttgattgatatgtac |
22476458 |
T |
|
| Q |
107 |
tggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattatgaattagttaggatggatttgcagaataatatgcactattcttatat |
206 |
Q |
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| T |
22476457 |
tggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattatgaattagttaggatggatttgcagaataatatgcactattcttatat |
22476358 |
T |
|
| Q |
207 |
ttatgttcatttcaatttggcctaatttttgcagaa |
242 |
Q |
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| T |
22476357 |
ttatgttcatttcaatttggcctaatttttgcagaa |
22476322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 26841933 - 26842174
Alignment:
| Q |
8 |
tattgagtggtgaaattgtgattgattattgagatgttagttatttttagctgtatataatttgtgttttttggaatttggtatttgattgatatgtact |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
26841933 |
tattgagtggtgaaatggtgattgattattgagatgttagttatttttagttgtatataatctgtgttttttggaaattggtatttgattgatatgtact |
26842032 |
T |
|
| Q |
108 |
ggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattatgaattagttaggatggatttgcagaataatatgcacta---ttcttat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26842033 |
ggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattgtgaattagttaggatggatttgcagaataatatgcactattcttcttat |
26842132 |
T |
|
| Q |
205 |
atttatgttcatttcaatttggcctaatttttgcagaataat |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
26842133 |
atttatgttcatttcaatttggcctaatttttgcagaataat |
26842174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 29099241 - 29099432
Alignment:
| Q |
8 |
tattgagtggtgaaattgtgattgattattgagatgttagttatttttagctgtatataattt-----gtgttttttggaatttggtatttgattgatat |
102 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
29099241 |
tattgagtggtgaaatggtgattgattattgagatgttagttacttttagctgtatataatataatctgtgttttttggaatttggtatttgattgatat |
29099340 |
T |
|
| Q |
103 |
gtactggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattatgaattagttaggatggatttgcagaataatatgca |
194 |
Q |
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||||||||||||||||||||||||||||| | |||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29099341 |
gtactggtttgaaaagtagtgttttttgtctgtggaagagattgcttgattaattaggaattagttaggatggatttgcagaataatatgca |
29099432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 21923122 - 21923182
Alignment:
| Q |
8 |
tattgagtggtgaaattgtgattgattattgagatgttagttatttttagctgtatataat |
68 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21923122 |
tattgagtggtgaaatggtgattaattattgagatgttagttatttttagctgtatataat |
21923182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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