View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_154 (Length: 251)
Name: NF1390_low_154
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_154 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 30995786 - 30995560
Alignment:
| Q |
13 |
tgaatacgaataaagaaaataatggagcatttagccatatacctaccttttttaattatctcaccgttatacaatataaagtgaagatttacacaaaaat |
112 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30995786 |
tgaatacgaataaagaaaataatggagcatttagctatatacct----tttttaattatctcaccgttatacaatataaagtgaagatttacacaaaaat |
30995691 |
T |
|
| Q |
113 |
ctaatatagattgttgtagtagataaatgaaaaatatgttctacaaatgcataatctagaagaaatctaaaagaaaacaacgtccaaaatacattttaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30995690 |
ctaatatagattgttgtagtagataaatgaaaaatatgttctacaaatgcataatctagaagaaatctaaaagaaaacaacgtccaaaatacattttaaa |
30995591 |
T |
|
| Q |
213 |
ggtaaaatctctcaaaagatatttcttaaag |
243 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
30995590 |
ggtaaaatctctcaaaagatatttcttaaag |
30995560 |
T |
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