View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_156 (Length: 251)
Name: NF1390_low_156
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_156 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 33426306 - 33426064
Alignment:
| Q |
1 |
cgcactatgttggttgagtctaattaactttcagtatggttatgactaaacaattaattatatgagg--aacttgaagattcaattcatatcaatttaat |
98 |
Q |
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| T |
33426306 |
cgcactatgttggttgagtctaattaactttcactatggttatgactaaataattaatgatatgagagaaacttgaagattcaattcatattaatttaat |
33426207 |
T |
|
| Q |
99 |
aagggtttttctcacaagtattcttagaggatccacatacactca-nnnnnnnggtacctaaatacgtcacacttgtacacatcattaa-attattattt |
196 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |||||||||||| ||| || ||| |
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| T |
33426206 |
aagggtttttctcacaagtattcttagaggattcacatacactcattttttttggtacctaaatacgtcaaatttgtacacatcactaatttttttaaaa |
33426107 |
T |
|
| Q |
197 |
tttaaataataatacctaataaacagtcaatcactccaaccta |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33426106 |
aaaaaataataatacctaataaacagtcaatcactccaaccta |
33426064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 32451736 - 32451797
Alignment:
| Q |
174 |
tacacatcattaaattattattttttaaataataatacctaataaacagtcaatcactccaac |
236 |
Q |
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||||||||| ||| |||| ||||||||| || ||||||||||||| || |||||||||||||| |
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| T |
32451736 |
tacacatcactaatttataattttttaa-tagtaatacctaataagcattcaatcactccaac |
32451797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 46487103 - 46487062
Alignment:
| Q |
195 |
tttttaaataataatacctaataaacagtcaatcactccaac |
236 |
Q |
| |
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||||| ||||||||||||||||||||| |||||| ||||||| |
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|
| T |
46487103 |
ttttttaataataatacctaataaacactcaatccctccaac |
46487062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 35539738 - 35539674
Alignment:
| Q |
172 |
tgtacacatcattaaattattattttttaaataataatacctaataaacagtcaatcactccaacc |
237 |
Q |
| |
|
||||||||||||| | |||| ||||||||| || || ||||||||||||| || |||||||||||| |
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| T |
35539738 |
tgtacacatcatttatttataattttttaa-tagtagtacctaataaacactcgatcactccaacc |
35539674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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