View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_low_157 (Length: 251)

Name: NF1390_low_157
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_low_157
NF1390_low_157
[»] chr6 (11 HSPs)
chr6 (1-241)||(14214122-14214362)
chr6 (1-174)||(14172698-14172871)
chr6 (1-174)||(14177234-14177407)
chr6 (1-174)||(14165867-14166040)
chr6 (197-238)||(31869717-31869758)
chr6 (197-239)||(10298868-10298910)
chr6 (198-239)||(29790216-29790257)
chr6 (78-134)||(13506244-13506300)
chr6 (78-134)||(13528887-13528943)
chr6 (199-239)||(28477764-28477804)
chr6 (199-239)||(29693894-29693934)
[»] chr7 (11 HSPs)
chr7 (197-239)||(35570265-35570307)
chr7 (194-239)||(36341626-36341671)
chr7 (197-239)||(6766761-6766803)
chr7 (197-239)||(4131714-4131756)
chr7 (197-239)||(8656083-8656125)
chr7 (197-239)||(25566758-25566800)
chr7 (197-239)||(27045619-27045661)
chr7 (197-239)||(42662196-42662238)
chr7 (198-239)||(24424623-24424664)
chr7 (195-240)||(49102023-49102068)
chr7 (197-237)||(5529020-5529060)
[»] chr8 (2 HSPs)
chr8 (195-239)||(9632162-9632206)
chr8 (199-241)||(40204931-40204973)
[»] chr4 (9 HSPs)
chr4 (197-239)||(30191679-30191721)
chr4 (195-239)||(19897646-19897690)
chr4 (197-240)||(35381104-35381147)
chr4 (197-239)||(2760938-2760980)
chr4 (197-239)||(5428587-5428629)
chr4 (198-240)||(12240388-12240430)
chr4 (198-240)||(20875457-20875499)
chr4 (194-240)||(23360184-23360230)
chr4 (198-239)||(3036990-3037031)
[»] chr3 (9 HSPs)
chr3 (198-240)||(41252973-41253015)
chr3 (198-239)||(15333017-15333058)
chr3 (203-237)||(3430487-3430521)
chr3 (197-239)||(22782275-22782317)
chr3 (197-239)||(22786639-22786681)
chr3 (198-232)||(27813819-27813853)
chr3 (197-239)||(32273719-32273761)
chr3 (197-239)||(42761694-42761736)
chr3 (195-239)||(44561791-44561835)
[»] chr1 (6 HSPs)
chr1 (197-239)||(15382637-15382679)
chr1 (197-239)||(44451499-44451541)
chr1 (203-239)||(30385356-30385392)
chr1 (199-239)||(38153488-38153528)
chr1 (197-239)||(40771983-40772025)
chr1 (198-238)||(3485419-3485459)
[»] chr2 (6 HSPs)
chr2 (199-240)||(9006994-9007035)
chr2 (199-239)||(43444751-43444791)
chr2 (197-239)||(7799856-7799898)
chr2 (198-240)||(11931701-11931743)
chr2 (199-240)||(42133763-42133804)
chr2 (199-240)||(33607387-33607428)
[»] chr5 (5 HSPs)
chr5 (197-239)||(24916459-24916501)
chr5 (197-240)||(10696799-10696842)
chr5 (197-239)||(24992349-24992391)
chr5 (203-240)||(7750096-7750133)
chr5 (197-237)||(12007845-12007885)
[»] scaffold0009 (1 HSPs)
scaffold0009 (197-238)||(217088-217129)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14214362 - 14214122
Alignment:
Q  1 gctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgagatgtattttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14214362 gctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgaaatgtattttc 14214263  T
Q  101 tatgtgtaattgcatctttatctataattcatcttatgtagtggaggcttacgaagtcaaccattgacaattgttggtttaataaatgattagattcgtt 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  14214262 tatgtgtaattgcatctttatctatatttcatcttatgtagtggaggcttacgaagtcaaccattgacaattgttggtctaataaatgatttcattcgtt 14214163  T
Q  201 tcaaaatacatgtcgcaattttacaatgtgcactattcatc 241  Q
    | ||||||||||||||||||||| |||||||| ||||||||    
T  14214162 ttaaaatacatgtcgcaattttataatgtgcattattcatc 14214122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 14172871 - 14172698
Alignment:
Q  1 gctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgagatgtattttc 100  Q
    |||||||||||||||||||| ||| ||| |||||||||||| ||| |||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  14172871 gctggttttggagctaataattgtgagacagcttttgaaaaaccacaggaaaagtatgtgcgtgctgcaatccatcttcgaaacaatgaaatgtattttc 14172772  T
Q  101 tatgtgtaattgcatctttatctataattcatcttatgtagtggaggcttacgaagtcaaccattgacaattgt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  14172771 tatgtgtaattgcatctttatctataattcatcttatgtagtgtaggcttatgaaatcaaccattgacaattgt 14172698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 14177407 - 14177234
Alignment:
Q  1 gctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgagatgtattttc 100  Q
    |||||||||||||||||||| ||| ||| |||||||||||| ||| |||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||    
T  14177407 gctggttttggagctaataattgtgagacagcttttgaaaaaccacaggaaaagtatgtgcgtgctgcaatccatcttcgaaacaatgaaatgtattttc 14177308  T
Q  101 tatgtgtaattgcatctttatctataattcatcttatgtagtggaggcttacgaagtcaaccattgacaattgt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  14177307 tatgtgtaattgcatctttatctataattcatcttatgtagtgtaggcttatgaaatcaaccattgacaattgt 14177234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 14166040 - 14165867
Alignment:
Q  1 gctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgagatgtattttc 100  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||| |||| || |||||||||||||||||||||| |||||||    
T  14166040 gctggttttggagctaataattgtcagaaaggttttgaaaaaccagaggaaaagaaggttcttgctacaatccatcttcgaaacaatgagatctattttc 14165941  T
Q  101 tatgtgtaattgcatctttatctataattcatcttatgtagtggaggcttacgaagtcaaccattgacaattgt 174  Q
    |  |||||||||| || |||||||||||||||||||| |||| ||| | ||  || | ||||||||||||||||    
T  14165940 ttggtgtaattgcttcattatctataattcatcttatttagttgagacatataaaataaaccattgacaattgt 14165867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 31869717 - 31869758
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 238  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  31869717 cgtttcaaaatacatgtcgcgattttacaatgtacactattc 31869758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 10298910 - 10298868
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||    
T  10298910 cgtttcaaaatacatatcgcaattttataatgtgcattattca 10298868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 29790216 - 29790257
Alignment:
Q  198 gtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||||||||| ||||||  ||||||||    
T  29790216 gtttcaaaatacatgtcgcaattttgcaatgtatactattca 29790257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 13506244 - 13506300
Alignment:
Q  78 tcgaaacaatgagatgtattttctatgtgtaattgcatctttatctataattcatct 134  Q
    ||||||||||||||| | |||| ||  |||||| || ||||||||||||||||||||    
T  13506244 tcgaaacaatgagatcttttttgtaaatgtaatggcttctttatctataattcatct 13506300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 13528887 - 13528943
Alignment:
Q  78 tcgaaacaatgagatgtattttctatgtgtaattgcatctttatctataattcatct 134  Q
    ||||||||||||||| | |||| ||  |||||| || ||||||||||||||||||||    
T  13528887 tcgaaacaatgagatcttttttgtaaatgtaatagcttctttatctataattcatct 13528943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 28477764 - 28477804
Alignment:
Q  199 tttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    |||||||||||||||| ||||||| ||||||| ||||||||    
T  28477764 tttcaaaatacatgtcacaattttgcaatgtgtactattca 28477804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 29693894 - 29693934
Alignment:
Q  199 tttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    |||||||||||||||| ||||||| ||||||| ||||||||    
T  29693894 tttcaaaatacatgtcacaattttgcaatgtgtactattca 29693934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 35570307 - 35570265
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35570307 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 35570265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 36341626 - 36341671
Alignment:
Q  194 attcgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||    
T  36341626 attcgtttcaaaatacatgtcgcatttttgcaatgtgcactattca 36341671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 6766803 - 6766761
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  6766803 cgtttcaaaatacatgtcgcaattttacaatctgcattattca 6766761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 4131756 - 4131714
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    |||||||||||| ||||||||||||||||||||  ||||||||    
T  4131756 cgtttcaaaatatatgtcgcaattttacaatgtatactattca 4131714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 8656083 - 8656125
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||| |||||||||  ||||||||||||||||||||||||||    
T  8656083 cgttttaaaatacataccgcaattttacaatgtgcactattca 8656125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 25566800 - 25566758
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||  | |||||||||||||||||||||    
T  25566800 cgtttcaaaatacatgtccaatttttacaatgtgcactattca 25566758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 27045661 - 27045619
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||| |||||||||||||||  ||||||||    
T  27045661 cgtttcaaaatacatgttgcaattttacaatgtatactattca 27045619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 42662196 - 42662238
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    |||||||||||||||||||||||||| ||||||| | ||||||    
T  42662196 cgtttcaaaatacatgtcgcaattttgcaatgtgtattattca 42662238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 24424664 - 24424623
Alignment:
Q  198 gtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||| ||||||||| |||| |||||||||    
T  24424664 gtttcaaaatacatgtcacaattttactatgttcactattca 24424623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 49102068 - 49102023
Alignment:
Q  195 ttcgtttcaaaatacatgtcgcaattttacaatgtgcactattcat 240  Q
    |||| ||||||||||||||  |||||||||||| ||||||||||||    
T  49102068 ttcgcttcaaaatacatgttacaattttacaatatgcactattcat 49102023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 5529020 - 5529060
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactatt 237  Q
    ||||||||||||||||||  ||||||||||||| |||||||    
T  5529020 cgtttcaaaatacatgtcctaattttacaatgtacactatt 5529060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 9632162 - 9632206
Alignment:
Q  195 ttcgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  9632162 ttcgtttcaaaatacatgtcgcaattttacaatgtgtactattca 9632206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 40204973 - 40204931
Alignment:
Q  199 tttcaaaatacatgtcgcaattttacaatgtgcactattcatc 241  Q
    |||| |||||||||||| ||||||| |||||||||||||||||    
T  40204973 tttctaaatacatgtcgtaattttaaaatgtgcactattcatc 40204931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 30191721 - 30191679
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  30191721 cgtttcaaaatacatgttgcaattttacaatgtgcactattca 30191679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 19897646 - 19897690
Alignment:
Q  195 ttcgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||    
T  19897646 ttcgtttcaaaatacttgtcgcaattttacaatgtacactattca 19897690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 35381147 - 35381104
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattcat 240  Q
    ||||||||||||||||||  | ||||||||||||||||||||||    
T  35381147 cgtttcaaaatacatgtccaatttttacaatgtgcactattcat 35381104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 2760980 - 2760938
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||  | |||||||||||||||||||||    
T  2760980 cgtttcaaaatacatgtccaatttttacaatgtgcactattca 2760938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 5428587 - 5428629
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||||| |||  ||||||||||||||||    
T  5428587 cgtttcaaaatacatgtcgcattttggcaatgtgcactattca 5428629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 12240430 - 12240388
Alignment:
Q  198 gtttcaaaatacatgtcgcaattttacaatgtgcactattcat 240  Q
    |||||||||||||||||  | ||||||||||||||||||||||    
T  12240430 gtttcaaaatacatgtccaatttttacaatgtgcactattcat 12240388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 20875499 - 20875457
Alignment:
Q  198 gtttcaaaatacatgtcgcaattttacaatgtgcactattcat 240  Q
    |||||||||||||||| | ||||||| ||||||||||||||||    
T  20875499 gtttcaaaatacatgttgtaattttaaaatgtgcactattcat 20875457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 23360184 - 23360230
Alignment:
Q  194 attcgtttcaaaatacatgtcgcaattttacaatgtgcactattcat 240  Q
    |||| ||||||||||||||||||| |||| |||| ||||||||||||    
T  23360184 attcatttcaaaatacatgtcgcatttttgcaatatgcactattcat 23360230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 3036990 - 3037031
Alignment:
Q  198 gtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    |||||||||||||||||| |||| ||||||||| ||||||||    
T  3036990 gtttcaaaatacatgtcgtaattatacaatgtgtactattca 3037031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 41253015 - 41252973
Alignment:
Q  198 gtttcaaaatacatgtcgcaattttacaatgtgcactattcat 240  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  41253015 gtttcaaaatatatgtcgcaattttacaatgtgcactattcat 41252973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 15333058 - 15333017
Alignment:
Q  198 gtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  15333058 gttttaaaatacatgtcgcaattttacaatgtgcactattca 15333017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 3430521 - 3430487
Alignment:
Q  203 aaaatacatgtcgcaattttacaatgtgcactatt 237  Q
    ||||||||||| |||||||||||||||||||||||    
T  3430521 aaaatacatgttgcaattttacaatgtgcactatt 3430487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 22782275 - 22782317
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||| ||||||||||||||||  |||||||||||||||    
T  22782275 cgtttcaaactacatgtcgcaattttttaatgtgcactattca 22782317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 22786639 - 22786681
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||| ||||||||||||||||  |||||||||||||||    
T  22786639 cgtttcaaactacatgtcgcaattttttaatgtgcactattca 22786681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 27813853 - 27813819
Alignment:
Q  198 gtttcaaaatacatgtcgcaattttacaatgtgca 232  Q
    |||||||||||||||| ||||||||||||||||||    
T  27813853 gtttcaaaatacatgttgcaattttacaatgtgca 27813819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 32273719 - 32273761
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||    
T  32273719 cgtttcaaaatacatgtcgtaatttcacaatgtgcattattca 32273761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 42761736 - 42761694
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||  | |||||||||||||||||||||    
T  42761736 cgtttcaaaatacatgtccaatttttacaatgtgcactattca 42761694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 44561791 - 44561835
Alignment:
Q  195 ttcgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||| |||  ||| ||||||||||||||||    
T  44561791 ttcgtttcaaaatacatgttgcatgtttgcaatgtgcactattca 44561835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 15382679 - 15382637
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  15382679 cgtttcaaaatacatgtcgcaattttacaatgtacactattca 15382637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 44451541 - 44451499
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  44451541 cgtttcaaaatacatgttgcaattttactatgtgcactattca 44451499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 30385392 - 30385356
Alignment:
Q  203 aaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||||| |||||||||||||||    
T  30385392 aaaatacatgtcgcaattttataatgtgcactattca 30385356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 38153528 - 38153488
Alignment:
Q  199 tttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  38153528 tttcaaaatacatgtcgcatttttataatgtgcactattca 38153488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 40772025 - 40771983
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||  | |||||||||||||||||||||    
T  40772025 cgtttcaaaatacatgtccaatttttacaatgtgcactattca 40771983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 3485459 - 3485419
Alignment:
Q  198 gtttcaaaatacatgtcgcaattttacaatgtgcactattc 238  Q
    |||| ||||||||||||| ||||||||||| ||||||||||    
T  3485459 gttttaaaatacatgtcgtaattttacaatatgcactattc 3485419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 9007035 - 9006994
Alignment:
Q  199 tttcaaaatacatgtcgcaattttacaatgtgcactattcat 240  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  9007035 tttcaaaatacatgtcgcaattttacaatgtgcattattcat 9006994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 43444791 - 43444751
Alignment:
Q  199 tttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  43444791 tttcaaaatacatgtcgcaattttacaatgtgcattattca 43444751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 7799856 - 7799898
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||||| |||| ||||||||||||||||    
T  7799856 cgtttcaaaatacatgtcgcatttttgcaatgtgcactattca 7799898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 11931701 - 11931743
Alignment:
Q  198 gtttcaaaatacatgtcgcaattttacaatgtgcactattcat 240  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  11931701 gtttcaaaatacatgtcgcaattttacaatatgcattattcat 11931743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 42133763 - 42133804
Alignment:
Q  199 tttcaaaatacatgtcgcaattttacaatgtgcactattcat 240  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  42133763 tttcaaaatacatgtcgtaattttaaaatgtgcactattcat 42133804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 33607387 - 33607428
Alignment:
Q  199 tttcaaaatacatgtcgcaattttacaatgtgcactattcat 240  Q
    ||||||||||||||||  | ||||||||||||||||||||||    
T  33607387 tttcaaaatacatgtccaatttttacaatgtgcactattcat 33607428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 24916501 - 24916459
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    |||||||||||||||||| ||||||||||||||| ||||||||    
T  24916501 cgtttcaaaatacatgtcacaattttacaatgtgtactattca 24916459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 10696799 - 10696842
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattcat 240  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||    
T  10696799 cgtttcaaaatacacgtcgctattttgcaatgtgcactattcat 10696842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 24992391 - 24992349
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattca 239  Q
    ||||||||||||||||||  | |||||||||||||||||||||    
T  24992391 cgtttcaaaatacatgtcatagttttacaatgtgcactattca 24992349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 7750133 - 7750096
Alignment:
Q  203 aaaatacatgtcgcaattttacaatgtgcactattcat 240  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  7750133 aaaatacacgtcgtaattttacaatgtgcactattcat 7750096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 12007885 - 12007845
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactatt 237  Q
    ||||||||||||||||||||| ||||| | |||||||||||    
T  12007885 cgtttcaaaatacatgtcgcatttttatattgtgcactatt 12007845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 217129 - 217088
Alignment:
Q  197 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 238  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  217129 cgtttcaaaatacaagtcgcaattttacaatgtgcaatattc 217088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 8454 times since January 2019
Visitors: 7802