View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_158 (Length: 251)
Name: NF1390_low_158
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_158 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 1051646 - 1051860
Alignment:
| Q |
34 |
ccataccttttccaaagccttttatgaaaaccagatcactagattgaacatataaaagcaaaactaaatgtttaaaacaagaactaaccgagaacccctc |
133 |
Q |
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| T |
1051646 |
ccataccttttccaaagccttttatgaaaaccagatcactagattgaacatataaaagcaaaaccaaatgtttaaaacaagaactaaccgagaacccctc |
1051745 |
T |
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| Q |
134 |
aacatttttctaacaaccaaatccaccccatcactacctcctactaagttctgtccaacatcaccacgggtagcttccaattcagtgaaaacttcttctt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |
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| T |
1051746 |
aacatttttctaacaaccaaatccaccccatcactacctcctactaagttctgtccaacaccaccacgggtagcttccaattcattgaaaa---cttctt |
1051842 |
T |
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| Q |
234 |
cccatacaaacaacgacc |
251 |
Q |
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|||||||||||||||||| |
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| T |
1051843 |
cccatacaaacaacgacc |
1051860 |
T |
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