View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_161 (Length: 250)
Name: NF1390_low_161
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_161 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 50821997 - 50822238
Alignment:
| Q |
1 |
caatcgagtgaatcaatcttttacacaaaccctgcgatctaaaggattccatggtagccacaatggggatttccacaaacccatttcttgcatgtgccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50821997 |
caatcgagtgaatcaatcttttacacaaaccctgcgatctaaaggattccatggtagccacaatggggatttccacaaacccatttcttgcatgtgccct |
50822096 |
T |
|
| Q |
101 |
aaaaacagcaacactggcacattttccttccttttgaattatacacgtgtaaaaccctccgtgttcaccctttttgttgtaaaccatttgttccaccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50822097 |
aaaaacagcaacactggcacattttccttccttttgaattatacacgtgtaaaaccctccgtgttcaccctttttgttgtaaaccatttgttccaccatg |
50822196 |
T |
|
| Q |
201 |
ctttcaattcccggaccaaagccataacataacgtctctgct |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50822197 |
ctttcaattcccggaccaaagccataacataacgtttctgct |
50822238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 50853864 - 50853623
Alignment:
| Q |
1 |
caatcgagtgaatcaatcttttacacaaaccctgcgatctaaaggattccatggtagccacaatggggatttccacaaacccatttcttgcatgtgccct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853864 |
caatcgagtgaatcaatcttttacacaaaccctgcgatctaaaggattccatggtagccacaatggggatttccacaaacccatttcttgcatgtgccct |
50853765 |
T |
|
| Q |
101 |
aaaaacagcaacactggcacattttccttccttttgaattatacacgtgtaaaaccctccgtgttcaccctttttgttgtaaaccatttgttccaccatg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853764 |
aaaaacagcaacactggcacattttccttccttttgaattatacacgtgtaaaaccctccgtgttcaccctttttgttgtaaaccatttgttccaccatg |
50853665 |
T |
|
| Q |
201 |
ctttcaattcccggaccaaagccataacataacgtctctgct |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50853664 |
ctttcaattcccggaccaaagccataacataacgtttctgct |
50853623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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