View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390_low_168 (Length: 233)
Name: NF1390_low_168
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1390_low_168 |
| |
|
Alignment Details
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13879619 - 13879675
Alignment:
Q |
1 |
caaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
57 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
13879619 |
caaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
13879675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 13879697 - 13879734
Alignment:
Q |
82 |
cagctcattggtgttgaaatagtgaatgagtcgaggag |
119 |
Q |
|
|
|||||||||||||||||||||| |||||||||| |||| |
|
|
T |
13879697 |
cagctcattggtgttgaaatagcgaatgagtcgtggag |
13879734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13218 times since January 2019
Visitors: 8270