View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_low_172 (Length: 222)

Name: NF1390_low_172
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_low_172
NF1390_low_172
[»] chr7 (4 HSPs)
chr7 (14-106)||(9371570-9371662)
chr7 (14-101)||(6472521-6472608)
chr7 (14-101)||(21358269-21358356)
chr7 (14-97)||(35013252-35013335)
[»] chr5 (5 HSPs)
chr5 (14-106)||(32863399-32863491)
chr5 (14-101)||(3173919-3174006)
chr5 (14-106)||(10572453-10572545)
chr5 (15-89)||(41959231-41959305)
chr5 (15-91)||(43299993-43300069)
[»] chr1 (5 HSPs)
chr1 (14-110)||(26014272-26014368)
chr1 (14-106)||(29599528-29599620)
chr1 (14-106)||(48183989-48184081)
chr1 (14-106)||(26354754-26354846)
chr1 (14-99)||(324437-324521)
[»] chr2 (1 HSPs)
chr2 (21-111)||(25697852-25697942)
[»] chr4 (6 HSPs)
chr4 (14-111)||(25808915-25809012)
chr4 (14-106)||(8433257-8433349)
chr4 (14-110)||(46164643-46164739)
chr4 (14-77)||(21604205-21604268)
chr4 (37-101)||(47825660-47825724)
chr4 (33-91)||(54785486-54785544)
[»] chr8 (6 HSPs)
chr8 (14-101)||(27576516-27576603)
chr8 (14-99)||(18068337-18068422)
chr8 (21-106)||(22432576-22432661)
chr8 (24-101)||(774969-775046)
chr8 (24-101)||(780623-780700)
chr8 (14-101)||(6786207-6786293)
[»] chr6 (2 HSPs)
chr6 (14-101)||(16497454-16497541)
chr6 (26-101)||(32396987-32397062)
[»] chr3 (1 HSPs)
chr3 (14-101)||(9456169-9456256)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 9371662 - 9371570
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataactatt 106  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9371662 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaatatt 9371570  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 6472521 - 6472608
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472521 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 6472608  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 21358269 - 21358356
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 101  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21358269 agatgaaagagaaaggggaaaaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 21358356  T

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Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 35013252 - 35013335
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgt 97  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35013252 agatgaaagagaaaggggaaaaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgt 35013335  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 32863491 - 32863399
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataactatt 106  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32863491 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaatatt 32863399  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 3174006 - 3173919
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3174006 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 3173919  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 10572545 - 10572453
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataactatt 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  10572545 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcgtattagttaagggcattatagtaatttccagtgtataaatatt 10572453  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 41959231 - 41959305
Alignment:
Q  15 gatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatt 89  Q
    ||||| |||||||||| ||||||||||||| | ||||||| |||| |||||||| ||||||| || |||||||||    
T  41959231 gatgaaagagaaagggaaagaggaaatgaagtagaattgggaatactcatattacttaagggtataatagtaatt 41959305  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 43300069 - 43299993
Alignment:
Q  15 gatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttc 91  Q
    ||||| |||||||||| ||||||||||||| | ||||||| | || |||||||| | ||||| || |||||||||||    
T  43300069 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatattactgaagggtataatagtaatttc 43299993  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 26014368 - 26014272
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataactattattt 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  26014368 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaattttattt 26014272  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 29599528 - 29599620
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataactatt 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  29599528 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattataggaatttccagtgtataaatatt 29599620  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 48184081 - 48183989
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataactatt 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  48184081 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattaattaagggcattatagtaatttccagtgtataaatatt 48183989  T

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Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 26354846 - 26354754
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataactatt 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| ||||    
T  26354846 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattaataaagggcattgtagtaatttccagtgtataaatatt 26354754  T

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Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 324521 - 324437
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtat 99  Q
    |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  324521 agatgaaagagaaaggggaagaagaaatgaaattgaattggta-tattcatattagttaagggcattatagtaatttccagtgtat 324437  T

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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 25697852 - 25697942
Alignment:
Q  21 agagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataactattattta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  25697852 agagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaatatttttta 25697942  T

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Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 25808915 - 25809012
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataactattattta 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||    
T  25808915 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaaattccagtgtataatttttattta 25809012  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 8433257 - 8433349
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataactatt 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  8433257 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtagtttccagtgtataaatatt 8433349  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 46164643 - 46164739
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataactattattt 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  46164643 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttcgagtgtataatttttattt 46164739  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 21604268 - 21604205
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggc 77  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604268 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggc 21604205  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 47825724 - 47825660
Alignment:
Q  37 gaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 101  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  47825724 gaaatgaaattgaattggtaatattcatattaattaagggcattatagtaatttccagtatataa 47825660  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 54785486 - 54785544
Alignment:
Q  33 agaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttc 91  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||    
T  54785486 agaggaaatgaaattgaattggtaatattcatattagcgaagggcattacggtaatttc 54785544  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 27576603 - 27576516
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27576603 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattaattaagggcattatagtaatttccagtgtataa 27576516  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 18068422 - 18068337
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtat 99  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18068422 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattaattaagggcattatagtaatttccagtgtat 18068337  T

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Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 22432576 - 22432661
Alignment:
Q  21 agagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataactatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  22432576 agagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattaaagtaatttccagtgtataaatatt 22432661  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 774969 - 775046
Alignment:
Q  24 gaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 101  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||  |||||||||| ||||||||    
T  774969 gaaaggggaagaggaaatgaaattgaattggtaatattgatattaataaagggtattgaagtaatttcctgtgtataa 775046  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 780623 - 780700
Alignment:
Q  24 gaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 101  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||  |||||||||| ||||||||    
T  780623 gaaaggggaagaggaaatgaaattgaattggtaatattgatattaataaagggtattgaagtaatttcctgtgtataa 780700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 6786293 - 6786207
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 101  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||  ||||| |||| | |||||||||  |||||||    
T  6786293 agatgaaagagaaaggggaagagaaaatgaaattgaattggtaatattcatatta-ataaggtcattgtcgtaatttcctatgtataa 6786207  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 16497454 - 16497541
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16497454 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaattttcagtgtataa 16497541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 32397062 - 32396987
Alignment:
Q  26 aaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 101  Q
    |||||||||||||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||| ||||||||    
T  32397062 aaggggaagaggaaatgaaattgaattggtaacattcatattaataaagggcattgtagtaatttcctgtgtataa 32396987  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 9456256 - 9456169
Alignment:
Q  14 agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataa 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9456256 agatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattaattaagggcattatagtaatttccagtgtataa 9456169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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