View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_178 (Length: 218)
Name: NF1390_low_178
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_178 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 35672320 - 35672440
Alignment:
| Q |
1 |
caaaagaatatattttcttagatttatcaagagatatacatgacactaccaacacaaatgcacaaaagaagatattttcttagatttatcaaaggaaagt |
100 |
Q |
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| T |
35672320 |
caaaagaatatattttcttagatttatcaagagatatacatgacactaccaacacaaatgcacaaaagaagatattttcttagatttatcaaaggaaagt |
35672419 |
T |
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| Q |
101 |
gaagctttacctgttaaaatc |
121 |
Q |
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|||||||||||| |||||||| |
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| T |
35672420 |
gaagctttacctattaaaatc |
35672440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 38456401 - 38456492
Alignment:
| Q |
1 |
caaaagaatatattttcttagatttatcaagagatatacatgacactaccaacacaaatgcacaaaagaagatattttcttagatttatcaa |
92 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38456401 |
caaaagaagatattttcttagatttatcaagagatatacatgacactaccaacacaaaagcacaaaagaagatattttcttagatttatcaa |
38456492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 35672307 - 35672349
Alignment:
| Q |
50 |
caacacaaatgcacaaaagaagatattttcttagatttatcaa |
92 |
Q |
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| T |
35672307 |
caacacaaatgcacaaaagaatatattttcttagatttatcaa |
35672349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 38456398 - 38456430
Alignment:
| Q |
60 |
gcacaaaagaagatattttcttagatttatcaa |
92 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
38456398 |
gcacaaaagaagatattttcttagatttatcaa |
38456430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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