View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_18 (Length: 659)
Name: NF1390_low_18
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 449 - 636
Target Start/End: Original strand, 1034500 - 1034678
Alignment:
| Q |
449 |
cccatatgtggcatttttaattaannnnnnnaagggtaattttgtccattcaacttcaccttctctcttctatctgcacagtcatttcttttttccattt |
548 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034500 |
cccatatgtggcatttttaattattttttttaagggtaattttgtccattcaacttcaccttctctcttctatctgcacagtcatttcttttttccattt |
1034599 |
T |
|
| Q |
549 |
ccatccacttacttctttctcttcactcccttcaccaccacctacctccgcctttctctcacgaccaccatcaacaccgtcgcccacc |
636 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| | |||||||| |
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| T |
1034600 |
ccatccacttacttctttct---------cttcaccaccacctacctcctcctttctctcacgaccaccgtcaacactgccgcccacc |
1034678 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 445 - 636
Target Start/End: Original strand, 43353782 - 43353964
Alignment:
| Q |
445 |
acaccccatatgtggcatttttaattaannnnnnnaagggtaattttgtccattcaacttcaccttctctcttctatctgcacagtcatttcttttttcc |
544 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
43353782 |
acaccccatatgtggcatttttaattaatttttttaagggtaattttgtccattcaacttcatcttctctcttctatctgcagagtcatttcttttttcc |
43353881 |
T |
|
| Q |
545 |
atttccatccacttacttctttctcttcactcccttcaccaccacctacctccgcctttctctcacgaccaccatcaacaccgtcgcccacc |
636 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |||| |||| |||||||| |
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| T |
43353882 |
atttccatccacttacttctttct---------cttcaccgccacctacctcctcctttctctcacgaccaccgtcaataccgccgcccacc |
43353964 |
T |
|
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Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 401 - 636
Target Start/End: Complemental strand, 748257 - 748024
Alignment:
| Q |
401 |
gagaactgatacatagacaaactaagctggcacaccccctttgtacacccca-tatgtggcatttttaattaannnnnnnaagggtaattttgtccattc |
499 |
Q |
| |
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||||||||||||||| ||| ||| ||||||| ||||||||| ||||||| | |||||||||||||||||||| ||||||||||||||| |||| |
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| T |
748257 |
gagaactgatacatatacacacttagctggccaacccccttt-tacaccctaatatgtggcatttttaattaattttatcaagggtaattttgtcaattc |
748159 |
T |
|
| Q |
500 |
aacttcaccttctctcttctatctgca-ca-gtcatttcttttttccatttccatccacttacttctttctcttcactcc-cttcaccaccacctacctc |
596 |
Q |
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||||||||||||||| |||||| | || || ||||||| || |||||||||||||| ||||||||||||| || ||||||||||||||||||| |
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| T |
748158 |
gcgttcaccttctctcttttatctgaaacacgttatttctt----cc--ttccatccacttacctctttctcttcacccctcttcaccaccacctacctc |
748065 |
T |
|
| Q |
597 |
cgcctttctctca-cgaccaccatcaacaccgtcgcccacc |
636 |
Q |
| |
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| T |
748064 |
ctcctttctctcaccgaccaccgtcaacaccgccgcccacc |
748024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 401 - 538
Target Start/End: Complemental strand, 6310336 - 6310200
Alignment:
| Q |
401 |
gagaactgatacatagacaaactaagctggcacaccccctttgtacaccccatatgtggcatttttaattaannnnnnnaagggtaattttgtccattca |
500 |
Q |
| |
|
||||||||||||| | | | ||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |
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| T |
6310336 |
gagaactgatacacatatacacttagctggcaaaccccctttgtacaccccatatgtggcatttttaattaattttattaagggtaattttgtcaatcca |
6310237 |
T |
|
| Q |
501 |
acttcaccttctctcttctatctgcacagtcatttctt |
538 |
Q |
| |
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||||||||||||||||||||||| || |||||||||| |
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| T |
6310236 |
ccttcaccttctctcttctatctgaac-gtcatttctt |
6310200 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 228 - 372
Target Start/End: Complemental strand, 22189941 - 22189798
Alignment:
| Q |
228 |
catcctttagaggattagatttgagcctcaagttgctcttcaaattgatattgtgtttttaggtaagccattggatgtggaggagttggtgct-ggtttt |
326 |
Q |
| |
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|||| ||||||||||||| || |||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || | |||| |
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|
| T |
22189941 |
catcatttagaggattaggttcgagccttaagttgctcttcaaattgata--ctgttttcaggtaagcatttggatgtggaggagttggtactagttttt |
22189844 |
T |
|
| Q |
327 |
ttgggagacgtcttagcctaacttgttctcattatgagtggtggtg |
372 |
Q |
| |
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||||||||| |||||||||||||| || |||||| ||| ||||||| |
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| T |
22189843 |
ttgggagacttcttagcctaacttattttcattacgagcggtggtg |
22189798 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 400 - 636
Target Start/End: Original strand, 30961191 - 30961425
Alignment:
| Q |
400 |
agagaactgatacatagacaaactaagctggcacaccccctttgtacacccca-tatgtggcatttttaattaannnnnnnaagggtaattttgtccatt |
498 |
Q |
| |
|
|||||||||||| ||| ||| ||| ||||||| ||||||||| |||| |||| |||||||||||||||||||| ||||||||||||||| ||| |
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| T |
30961191 |
agagaactgatatatatacacactgagctggccaacccccttt-tacatcccaatatgtggcatttttaattaattttatcaagggtaattttgtcaatt |
30961289 |
T |
|
| Q |
499 |
caacttcaccttctctcttctatctgca-ca-gtcatttcttttttccatttccatccacttacttctttctcttcactcc-cttcaccaccacctacct |
595 |
Q |
| |
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| ||||||||||||||| |||||| | || || ||||||| || |||||||||||||| | ||||||||||| || |||||||||||||||||| |
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| T |
30961290 |
cgcgttcaccttctctcttttatctgaaacacgttatttctt----cc--ttccatccacttacctatttctcttcacacctcttcaccaccacctacct |
30961383 |
T |
|
| Q |
596 |
ccgcctttctctca-cgaccaccatcaacaccgtcgcccacc |
636 |
Q |
| |
|
|| ||||||||||| | |||||| ||||||||| |||||||| |
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|
| T |
30961384 |
cctcctttctctcaccaaccaccgtcaacaccgccgcccacc |
30961425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 400 - 538
Target Start/End: Complemental strand, 30129897 - 30129760
Alignment:
| Q |
400 |
agagaactgatacatagacaaactaagctggcacaccccctttgtacaccccatatgtggcatttttaattaannnnnnnaagggtaattttgtccattc |
499 |
Q |
| |
|
|||||||||||||| | ||| | | ||||| || | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | |
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|
| T |
30129897 |
agagaactgatacacatacacatttagctgacaaatcccctttgtacaccccatatgtggcatttttaattaattttattaagggtaattttgtcaatcc |
30129798 |
T |
|
| Q |
500 |
aacttcaccttctctcttctatctgcacagtcatttctt |
538 |
Q |
| |
|
| |||||| |||||||||||||||| || |||||||||| |
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|
| T |
30129797 |
accttcactttctctcttctatctgaac-gtcatttctt |
30129760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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