View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_19 (Length: 644)
Name: NF1390_low_19
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_19 |
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| [»] scaffold0229 (2 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 236 - 634
Target Start/End: Original strand, 19107 - 19505
Alignment:
| Q |
236 |
tttttgtttacaagttattagttccaatgcatcaaaatcaaattgaagaggcaacaacttgatgctatagggaggacatacgttggagtattttccacca |
335 |
Q |
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| T |
19107 |
tttttgtttacaagttattagtttcaatgcatcaaaatcaaattgaagaggcaacaacttgatgctatagggaggacatacgttggagtattttccacca |
19206 |
T |
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| Q |
336 |
taagtccacaaactcttattttgcgaaagacacccttagaaaattatgtgaaacaagcaattcagaagggtttccccctacgatactgatgactgaacat |
435 |
Q |
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| T |
19207 |
taagtccacacactcttattttgcgaaagacacccttagaaaattatgtgaaacaagcaattcagaagggtttccccctacgatactgatgactgaacat |
19306 |
T |
|
| Q |
436 |
tttgttaatctaagcttataaactaaattcatgtatactaaaaacttgtacattaattctgcatattacaacgatcctgctacaaactgaataattaatg |
535 |
Q |
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| T |
19307 |
tttgttaatctaagcttataaactaaattcatgtatactaaaaaattgtacattaattctgcatattacaacgatcctgctacaaactgaataattaatg |
19406 |
T |
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| Q |
536 |
atgaaaatggnnnnnnntaattaattaccttagcaaggagtatgaccaaaggacctcattggaaggtccatacttattgaccaaggatcataacctatg |
634 |
Q |
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| T |
19407 |
atgaaaatggaaaaaaataattaattaccttagcaaggagtatgaccaaaggacctcattggaaggtccatacttattgaccaaggatcataacctatg |
19505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 51 - 287
Target Start/End: Original strand, 18868 - 19106
Alignment:
| Q |
51 |
agatcgattggtgattgagccgtgcggcnnnnnnnn-atcataaatgataatgatctctagagttttggagagaataacaaaacaaagtcaacaagtaat |
149 |
Q |
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| T |
18868 |
agatcgattggtgattgagccgtgcggctttttttttatcataaatgataatgatctctagagttttggagagaataacaaaacaaagtcaacaagtaat |
18967 |
T |
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| Q |
150 |
caaggaagcaacgatcatcaaagcaacatattcctatgagcctctcccatcag-nnnnnnnnatcagaaaaaacacatcttaatgcatttttgtttacaa |
248 |
Q |
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| T |
18968 |
caaggaagcaacgatcatcaaagcaacatattcctatgagcctctcccatcagtttttttttatcagaaaaaacacatcttaatgcatttttgtttacaa |
19067 |
T |
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| Q |
249 |
gttattagttccaatgcatcaaaatcaaattgaagaggc |
287 |
Q |
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| T |
19068 |
gttattagtttcaatgcatcaaaatcaaattgaagaggc |
19106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 236 - 634
Target Start/End: Complemental strand, 1399251 - 1398853
Alignment:
| Q |
236 |
tttttgtttacaagttattagttccaatgcatcaaaatcaaattgaagaggcaacaacttgatgctatagggaggacatacgttggagtattttccacca |
335 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1399251 |
tttttgtttacaagttattagtttcaatgcatcaaaatcaaattgaagaggcaacaacttgatgctatagggaggacatacgttggagtattttccacca |
1399152 |
T |
|
| Q |
336 |
taagtccacaaactcttattttgcgaaagacacccttagaaaattatgtgaaacaagcaattcagaagggtttccccctacgatactgatgactgaacat |
435 |
Q |
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| T |
1399151 |
taagtccacacactcttattttgcgaaagacacccttagaaaattatgtgaaacaagcaattcagaagggtttccccctacgatactgatgactgaacat |
1399052 |
T |
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| Q |
436 |
tttgttaatctaagcttataaactaaattcatgtatactaaaaacttgtacattaattctgcatattacaacgatcctgctacaaactgaataattaatg |
535 |
Q |
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| T |
1399051 |
tttgttaatctaagcttataaactaaattcatgtatactaaaaaattgtacattaattctgcatattacaacgatcctgctacaaactgaataattaatg |
1398952 |
T |
|
| Q |
536 |
atgaaaatggnnnnnnntaattaattaccttagcaaggagtatgaccaaaggacctcattggaaggtccatacttattgaccaaggatcataacctatg |
634 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1398951 |
atgaaaatggaaaaaaataattaattaccttagcaaggagtatgaccaaaggacctcattggaaggtccatacttattgaccaaggatcataacctatg |
1398853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 51 - 287
Target Start/End: Complemental strand, 1399490 - 1399252
Alignment:
| Q |
51 |
agatcgattggtgattgagccgtgcggcnnnnnnnn-atcataaatgataatgatctctagagttttggagagaataacaaaacaaagtcaacaagtaat |
149 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1399490 |
agatcgattggtgattgagccgtgcggctttttttttatcataaatgataatgatctctagagttttggagagaataacaaaacaaagtcaacaagtaat |
1399391 |
T |
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| Q |
150 |
caaggaagcaacgatcatcaaagcaacatattcctatgagcctctcccatcag-nnnnnnnnatcagaaaaaacacatcttaatgcatttttgtttacaa |
248 |
Q |
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| T |
1399390 |
caaggaagcaacgatcatcaaagcaacatattcctatgagcctctcccatcagtttttttttatcagaaaaaacacatcttaatgcatttttgtttacaa |
1399291 |
T |
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| Q |
249 |
gttattagttccaatgcatcaaaatcaaattgaagaggc |
287 |
Q |
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| T |
1399290 |
gttattagtttcaatgcatcaaaatcaaattgaagaggc |
1399252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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