View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_low_21 (Length: 643)

Name: NF1390_low_21
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_low_21
NF1390_low_21
[»] chr4 (3 HSPs)
chr4 (193-419)||(29057878-29058114)
chr4 (426-481)||(36925908-36925963)
chr4 (117-154)||(22255673-22255710)
[»] chr3 (3 HSPs)
chr3 (426-546)||(33455400-33455520)
chr3 (112-185)||(33455700-33455773)
chr3 (253-305)||(11354172-11354222)
[»] chr7 (2 HSPs)
chr7 (426-546)||(29060359-29060479)
chr7 (79-185)||(29060658-29060765)
[»] chr1 (3 HSPs)
chr1 (426-546)||(48834717-48834837)
chr1 (112-185)||(48835016-48835089)
chr1 (132-169)||(49420160-49420197)
[»] chr5 (1 HSPs)
chr5 (193-365)||(35431508-35431678)
[»] chr6 (2 HSPs)
chr6 (330-365)||(34607568-34607603)
chr6 (117-169)||(29647387-29647439)
[»] chr8 (2 HSPs)
chr8 (119-169)||(35840465-35840515)
chr8 (117-154)||(5433644-5433681)
[»] chr2 (1 HSPs)
chr2 (117-169)||(30545370-30545422)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 193 - 419
Target Start/End: Original strand, 29057878 - 29058114
Alignment:
Q  193 ataaacatctcccctttcaatttaacacggttagctattatgttaaaagtacatcttctat----------ctattgatgatgataatcttcatccacca 282  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||          |||||||||||||||||||||||||||||    
T  29057878 ataaacatctcccctttcaatttaacacggttagttattctgttaaaagtacatcttctatttttctgattctattgatgatgataatcttcatccacca 29057977  T
Q  283 atcctatatatttctgccattttattttaagctttcctttatttcaattatttcatatctcaattatcatagttcactgctttaccggaggagtactaaa 382  Q
    | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||    
T  29057978 aacctatatatttctgccattttattttaagcttttctttatttcaattatttcatatctcaattatcatagttcactgctttatcggaggaatattaaa 29058077  T
Q  383 aaaccataggccgttaactcttgcctgaacaatattt 419  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  29058078 aaaccataggccgttatctctttcctgaacaatattt 29058114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 426 - 481
Target Start/End: Complemental strand, 36925963 - 36925908
Alignment:
Q  426 tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatga 481  Q
    |||| |||||||||||||| ||||||||||||||||| ||||||||| ||| ||||    
T  36925963 ttttgatttctatgattattcaataattaaattcattatattcaaccgatcaatga 36925908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 22255673 - 22255710
Alignment:
Q  117 ttagattaaggagtagcacatattttatgatggtctgt 154  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  22255673 ttagattaaagaggagcacatattttatgatggtctgt 22255710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 426 - 546
Target Start/End: Original strand, 33455400 - 33455520
Alignment:
Q  426 tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatattatcacgaattt 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33455400 tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatattatcacgaattt 33455499  T
Q  526 gatatatttcagattgggaag 546  Q
    |||||||||||||||||||||    
T  33455500 gatatatttcagattgggaag 33455520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 33455773 - 33455700
Alignment:
Q  112 aacggttagattaaggagtagcacatattttatgatggtctgttcacaccatatattttccacacatcatcttc 185  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33455773 aacggttagattaaggagtaacacatattttatgatggtctgttcacaccatatatattccacacatcatcttc 33455700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 11354222 - 11354172
Alignment:
Q  253 tctattgatgatgataatcttcatccaccaatcctatatatttctgccatttt 305  Q
    |||||||||||||||||||||||||||| || ||  |||||||||||||||||    
T  11354222 tctattgatgatgataatcttcatccactaaacc--tatatttctgccatttt 11354172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 426 - 546
Target Start/End: Original strand, 29060359 - 29060479
Alignment:
Q  426 tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatattatcacgaattt 525  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  29060359 tttttatttctacgattatgcaataattaaattcattgtattcaaccaatcaatgagtaaatttcttataaatttcagctcatcatatcatcacgaattt 29060458  T
Q  526 gatatatttcagattgggaag 546  Q
    |||||||||||||||||||||    
T  29060459 gatatatttcagattgggaag 29060479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 29060765 - 29060658
Alignment:
Q  79 gggaattgtttcccaccatgggaaaannnnnnn-aacggttagattaaggagtagcacatattttatgatggtctgttcacaccatatattttccacaca 177  Q
    |||||||||||||||||||||||||         |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29060765 gggaattgtttcccaccatgggaaagttttttttaacggttagattaaggagtagcgcatattttatgatggtctgttcacaccatatattttccacaca 29060666  T
Q  178 tcatcttc 185  Q
    ||||||||    
T  29060665 tcatcttc 29060658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 426 - 546
Target Start/End: Original strand, 48834717 - 48834837
Alignment:
Q  426 tttttatttctatgattatgcaataattaaattcattgtattcaaccaatcgatgagtaaatttcttataaatttcagctcatcatattatcacgaattt 525  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  48834717 tttttatttctacgattatgcaataattaaattcattgtattcaaccaatcaatgagtaaatttcttataaatttcagctcatcatatcatcacgaattt 48834816  T
Q  526 gatatatttcagattgggaag 546  Q
    |||||||||||||||||||||    
T  48834817 gatatatttcagattgggaag 48834837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 48835089 - 48835016
Alignment:
Q  112 aacggttagattaaggagtagcacatattttatgatggtctgttcacaccatatattttccacacatcatcttc 185  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48835089 aacggttagattaaggagtagctcatattttatgatggtctgttcacaccatatattttccacacatcatcttc 48835016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 49420160 - 49420197
Alignment:
Q  132 gcacatattttatgatggtctgttcacaccatatattt 169  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  49420160 gcacacattttatgatggtctgtccacaccatatattt 49420197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 365
Target Start/End: Original strand, 35431508 - 35431678
Alignment:
Q  193 ataaacatctcccctttcaatttaacacggttagctattatgttaaaagtacatcttcta----tctattgatgatgataatcttcatccaccaatccta 288  Q
    |||||||  ||||||||||||||||||| |||| ||||| |||||| |||| |||  |||    ||| ||  | || ||||||||| ||||| || ||||    
T  35431508 ataaacacgtcccctttcaatttaacaccgttaactattctgttaagagtaaatcccctacttttctgtt--tcataataatcttcgtccactaaaccta 35431605  T
Q  289 tatatttctgccattttattttaagctttcctttatttcaattatttcatatctcaattatcatagttcactgcttt 365  Q
    |||  ||||||||||||  | |||||||| || ||||| |||||||||| |||||||||||||||||||||||||||    
T  35431606 tat--ttctgccatttt--tataagcttttctatatttaaattatttcaaatctcaattatcatagttcactgcttt 35431678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 365
Target Start/End: Complemental strand, 34607603 - 34607568
Alignment:
Q  330 ttatttcatatctcaattatcatagttcactgcttt 365  Q
    |||||||||||||| |||||||||||||||||||||    
T  34607603 ttatttcatatctcgattatcatagttcactgcttt 34607568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 29647387 - 29647439
Alignment:
Q  117 ttagattaaggagtagcacatattttatgatggtctgttcacaccatatattt 169  Q
    ||||||||| |||  ||||||||||||||||||| | | ||||||||||||||    
T  29647387 ttagattaaagaggtgcacatattttatgatggtttctccacaccatatattt 29647439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 35840515 - 35840465
Alignment:
Q  119 agattaaggagtagcacatattttatgatggtctgttcacaccatatattt 169  Q
    ||||||| |||  ||||| ||||||||||||||||| ||||||||||||||    
T  35840515 agattaaagaggtgcacacattttatgatggtctgtccacaccatatattt 35840465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 5433681 - 5433644
Alignment:
Q  117 ttagattaaggagtagcacatattttatgatggtctgt 154  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  5433681 ttagattaaagaggagcacatattttatgatggtctgt 5433644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 30545422 - 30545370
Alignment:
Q  117 ttagattaaggagtagcacatattttatgatggtctgttcacaccatatattt 169  Q
    ||||||||| |||  ||||| ||||||||||||| ||| ||||||||||||||    
T  30545422 ttagattaaagaggtgcacacattttatgatggtttgtccacaccatatattt 30545370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 7843 times since January 2019
Visitors: 7737