View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_22 (Length: 608)
Name: NF1390_low_22
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1390_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 3e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 297 - 522
Target Start/End: Original strand, 1145496 - 1145722
Alignment:
Q |
297 |
tgtcattctctcatgttagctatgcacaacgttccagacttctggtgtannnnnnnnn-ggtcttttatgatgcaatgaaagggcacaattgggaaatca |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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T |
1145496 |
tgtcattctctcatgttagctatgcacaacgttccagacttctggtgtattttttttttggtcttttatgatgcaatgaaagggcacaattgggaaatca |
1145595 |
T |
|
Q |
396 |
taaaaagatggaactttggcctgtttgtttcttcgctgttgtgcaaagattaaaaaacatgtgggccctacatgttttatctccctctcccctatttctc |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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T |
1145596 |
taaaaagatggaactttggcctgtttgtttcttcgctgttgtgcaaagattaaaaaacatgtgggccctacatattttatctccctctcccctatttctc |
1145695 |
T |
|
Q |
496 |
accacaaccaaactagataaatgctta |
522 |
Q |
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||||||||||||||||| ||||||||| |
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T |
1145696 |
accacaaccaaactagagaaatgctta |
1145722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 138 - 301
Target Start/End: Original strand, 1145292 - 1145455
Alignment:
Q |
138 |
ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaa |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
1145292 |
ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaa |
1145391 |
T |
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Q |
238 |
tattatcaaacttagccacattgattatcatccatttgataaaaaaccaaaactgattgtgtca |
301 |
Q |
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|
T |
1145392 |
tattatcaaacttagccacattgattatcatccatttgataaaaaaccaaaactgattgtgtca |
1145455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 1145132 - 1145245
Alignment:
Q |
29 |
acatcaagagcaaaattttcagaatattaaacagagtttttcatgcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagataaatc |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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T |
1145132 |
acatcaagagcaaaattttcagaatattaaacagagtttttcatgcttcaaactttgaaaatgaaattaaccaggcaagatattttactcgagataaatc |
1145231 |
T |
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Q |
129 |
cgcataaagctttc |
142 |
Q |
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|||||||||||||| |
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|
T |
1145232 |
cgcataaagctttc |
1145245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 138 - 273
Target Start/End: Complemental strand, 18279557 - 18279422
Alignment:
Q |
138 |
ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaa |
237 |
Q |
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|
||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||| ||| || || | ||||||||| |
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T |
18279557 |
ctttctaagttcccttttaattccattctatcctccaaagacttaatagactcgagaaaattcagcgtaaagcttttgatatatccaatatacgtcaaaa |
18279458 |
T |
|
Q |
238 |
tattatcaaacttagccacattgattatcatccatt |
273 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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|
T |
18279457 |
tattatcaaactttgccacattgattatcatccatt |
18279422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 8300513 - 8300621
Alignment:
Q |
36 |
gagcaaaattttcagaatattaaa--cagagtttttcatgcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagataaatccgcat |
133 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | |
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T |
8300513 |
gagcaaaattttcagaatattaaagacagagtttttcattcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagatagatctgcgt |
8300612 |
T |
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Q |
134 |
aaagctttc |
142 |
Q |
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|
|||| |||| |
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|
T |
8300613 |
aaagatttc |
8300621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 18279720 - 18279614
Alignment:
Q |
29 |
acatcaagagcaaaattttcagaatattaaacagagtttttcatgcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagataaatc |
128 |
Q |
|
|
|||||| |||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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|
T |
18279720 |
acatcatgagcaatactttcagaatattaaagacagtttttcatgcttcaaactttgaaaatgaaattaacaagccaagaaattttactcgagataagta |
18279621 |
T |
|
Q |
129 |
cgcataa |
135 |
Q |
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||||||| |
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T |
18279620 |
cgcataa |
18279614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 8296936 - 8297042
Alignment:
Q |
29 |
acatcaagagcaaaattttcagaatattaaa--cagagtttttcatgcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagataaa |
126 |
Q |
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|||||| ||||| |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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T |
8296936 |
acatcatgagcagaattttcagaatgttaaatacagagtttttcatgcttcaaact--------gaaattaacaaggcaagaaattttactagagataaa |
8297027 |
T |
|
Q |
127 |
tccgcataaagcttt |
141 |
Q |
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||||||||||||||| |
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T |
8297028 |
tccgcataaagcttt |
8297042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 8297090 - 8297154
Alignment:
Q |
138 |
ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcag |
202 |
Q |
|
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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|
T |
8297090 |
ctttctaagttcccttttaattccattctatcctccatagacttgatagactcgagaaaattcag |
8297154 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 8300668 - 8300804
Alignment:
Q |
138 |
ctttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttctaacaaacgtcaaaa |
237 |
Q |
|
|
|||||| |||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||||| |||||| |||| ||| |||||||||| |||| |
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T |
8300668 |
ctttctgagttcccttttaattccactctatcctccatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatctaacaaacagcaaag |
8300767 |
T |
|
Q |
238 |
tattatcaaacttagccacattgattatcatccattt |
274 |
Q |
|
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|||||| ||| | |||| || |||||||||||||| |
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|
T |
8300768 |
aattatccaacacaaccaccttaattatcatccattt |
8300804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 356 - 517
Target Start/End: Complemental strand, 27801597 - 27801441
Alignment:
Q |
356 |
gtcttttatgatgcaatgaaagggcacaattgggaaatcataaaaagatggaa-ctttggcctgtttgtttcttcgctgttgtgcaaagattaaaaaaca |
454 |
Q |
|
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|||||||||||||||||||||||| |||||||| |||| || |||| || ||| || | |||| ||| ||||||||||||| ||| |||||| | |
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T |
27801597 |
gtcttttatgatgcaatgaaagggtacaattggaaaattattaaaaaattgaaactcttgcctattt----cttcgctgttgtgttgagactaaaaataa |
27801502 |
T |
|
Q |
455 |
tgtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaat |
517 |
Q |
|
|
||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| |||| |
|
|
T |
27801501 |
cgtgggccctacatattttatctc--tctcccttatttctcaccacaaccaaactagagaaat |
27801441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 356 - 517
Target Start/End: Original strand, 30725023 - 30725180
Alignment:
Q |
356 |
gtcttttatgatgcaatgaaagggcacaattgggaaatcataaaaagatggaactttggcctgtttgtttcttcgctgttgtgcaaagattaaaaaacat |
455 |
Q |
|
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|||||||||||||||||||||||| |||||||| |||| | |||| | |||| | |||| ||| |||||||| |||| ||| | ||||| | |
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T |
30725023 |
gtcttttatgatgcaatgaaagggtacaattggaaaattgttaaaaacggaaactcttgcctattt----cttcgctgctgtgaggagactgaaaaaaac |
30725118 |
T |
|
Q |
456 |
gtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaat |
517 |
Q |
|
|
||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||| |
|
|
T |
30725119 |
gtgggccctacatattttatctctctcccccatatttctcaccacaaccaaactagataaat |
30725180 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 520
Target Start/End: Complemental strand, 41122211 - 41122148
Alignment:
Q |
456 |
gtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaatgct |
520 |
Q |
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||||| ||||||||| | | ||| ||||||||| ||||||||||||||||||| ||| ||||||| |
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|
T |
41122211 |
gtgggacctacatgtctaaactctctctcccct-tttctcaccacaaccaaacaagagaaatgct |
41122148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 356 - 522
Target Start/End: Original strand, 13885347 - 13885509
Alignment:
Q |
356 |
gtcttttatgatgcaatgaaagggcacaattgggaaatcataaaaagatggaactttggcctgtttgtttcttcgctgttgtgcaaagattaaaaaacat |
455 |
Q |
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|||||||||||||| |||||||| | ||||| || | || |||| |||||||| ||||| |||||||||||| ||||| |||| | |||||||| |
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T |
13885347 |
gtcttttatgatgctgtgaaagggtagaattgtaaacttattaaaaaatggaactctggcc----agtttcttcgctgatgtgcgaagactgaaaaacat |
13885442 |
T |
|
Q |
456 |
gtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaatgctta |
522 |
Q |
|
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|||||||||| |||||| ||||| |||| |||||||||||||| |||||||| |||| ||||||||| |
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|
T |
13885443 |
gtgggccctatatgtttaatctctctcttccctatttctcaccgcaaccaaattagagaaatgctta |
13885509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 423 - 520
Target Start/End: Original strand, 48403090 - 48403187
Alignment:
Q |
423 |
tttcttcgctgttgtgcaaagattaaaaaacatgtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaatgct |
520 |
Q |
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|||||||||| ||| | |||| ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |
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T |
48403090 |
tttcttcgctattgagagaagactaaaaaagtagtgggccctacatgttttatctctctctcccttatttctcaccacaaccaaactagagaaatgct |
48403187 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 456 - 520
Target Start/End: Original strand, 37515849 - 37515913
Alignment:
Q |
456 |
gtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaatgct |
520 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | ||||||| |
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|
T |
37515849 |
gtgggccctacatgttttatctctctctcccttatttctcaccacaaccaaactaaagaaatgct |
37515913 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 456 - 520
Target Start/End: Original strand, 36040944 - 36041008
Alignment:
Q |
456 |
gtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaactagataaatgct |
520 |
Q |
|
|
||||||||||||||||||||||| |||| || ||||||||||||||||||||||| | ||||||| |
|
|
T |
36040944 |
gtgggccctacatgttttatctctctctaccttatttctcaccacaaccaaactaaagaaatgct |
36041008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 510
Target Start/End: Complemental strand, 11446777 - 11446689
Alignment:
Q |
423 |
tttcttcgctgttgtgcaaagattaaaaaacatgtgggccctacatgtt-ttatctccctctcccctatttctcaccacaaccaaacta |
510 |
Q |
|
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|||||||||| ||| | |||| ||||||| |||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |
|
|
T |
11446777 |
tttcttcgctattgagataagactaaaaaagcagtggaccctacatgttattatctctctctcccttatttctcaccacaaccaaacta |
11446689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 508
Target Start/End: Original strand, 35877687 - 35877774
Alignment:
Q |
420 |
ttgtttcttcgctgttgtgcaaagattaaaaaacatgtgggccctacatgttttatctccctctcccctatttctcaccacaaccaaac |
508 |
Q |
|
|
|||||||||||| | |||| ||||||||||||| ||||| || ||| ||||| ||| |||| |||| ||||||||||||||||||| |
|
|
T |
35877687 |
ttgtttcttcgcagatgtgaggagattaaaaaaca-gtgggacccacaacttttaactctctcttccctctttctcaccacaaccaaac |
35877774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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