View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_25 (Length: 581)
Name: NF1390_low_25
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_25 |
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| [»] scaffold0229 (2 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 173 - 571
Target Start/End: Original strand, 19107 - 19505
Alignment:
| Q |
173 |
tttttgtttacaagttattagttccaatgcatcaaaatcaaattgaagaggcaacaacttgatgctatagggaggacatacgttggagtattttccacca |
272 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19107 |
tttttgtttacaagttattagtttcaatgcatcaaaatcaaattgaagaggcaacaacttgatgctatagggaggacatacgttggagtattttccacca |
19206 |
T |
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| Q |
273 |
taagtccacaaactcttattttgcgaaagacacccttagaaaattatgtgaaacaagcaattcagaagggtttccccctacgatactgatgactgaacat |
372 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19207 |
taagtccacacactcttattttgcgaaagacacccttagaaaattatgtgaaacaagcaattcagaagggtttccccctacgatactgatgactgaacat |
19306 |
T |
|
| Q |
373 |
tttgttaatctaagcttataaactaaattcatgtatactaaaaacttgtacattaattctgcatattacaacgatcctgctacaaactgaataattaatg |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19307 |
tttgttaatctaagcttataaactaaattcatgtatactaaaaaattgtacattaattctgcatattacaacgatcctgctacaaactgaataattaatg |
19406 |
T |
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| Q |
473 |
atgaaaatggnnnnnnntaattaattaccttagcaaggagtatgaccaaaggacctcattggaaggtccatacttattgaccaaggatcataacctatg |
571 |
Q |
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| T |
19407 |
atgaaaatggaaaaaaataattaattaccttagcaaggagtatgaccaaaggacctcattggaaggtccatacttattgaccaaggatcataacctatg |
19505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 18905 - 19106
Alignment:
| Q |
24 |
atcataaatgataatgatctctagagttttggagagaataacaaaacaaagtcaacaagtaatcaaggaagcaacgatcatcaaagcaacatattcctat |
123 |
Q |
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| T |
18905 |
atcataaatgataatgatctctagagttttggagagaataacaaaacaaagtcaacaagtaatcaaggaagcaacgatcatcaaagcaacatattcctat |
19004 |
T |
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| Q |
124 |
gagcctctcccatcag-nnnnnnnnatcagaaaaaacacatcttaatgcatttttgtttacaagttattagttccaatgcatcaaaatcaaattgaagag |
222 |
Q |
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| T |
19005 |
gagcctctcccatcagtttttttttatcagaaaaaacacatcttaatgcatttttgtttacaagttattagtttcaatgcatcaaaatcaaattgaagag |
19104 |
T |
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| Q |
223 |
gc |
224 |
Q |
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|| |
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| T |
19105 |
gc |
19106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 173 - 571
Target Start/End: Complemental strand, 1399251 - 1398853
Alignment:
| Q |
173 |
tttttgtttacaagttattagttccaatgcatcaaaatcaaattgaagaggcaacaacttgatgctatagggaggacatacgttggagtattttccacca |
272 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1399251 |
tttttgtttacaagttattagtttcaatgcatcaaaatcaaattgaagaggcaacaacttgatgctatagggaggacatacgttggagtattttccacca |
1399152 |
T |
|
| Q |
273 |
taagtccacaaactcttattttgcgaaagacacccttagaaaattatgtgaaacaagcaattcagaagggtttccccctacgatactgatgactgaacat |
372 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1399151 |
taagtccacacactcttattttgcgaaagacacccttagaaaattatgtgaaacaagcaattcagaagggtttccccctacgatactgatgactgaacat |
1399052 |
T |
|
| Q |
373 |
tttgttaatctaagcttataaactaaattcatgtatactaaaaacttgtacattaattctgcatattacaacgatcctgctacaaactgaataattaatg |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1399051 |
tttgttaatctaagcttataaactaaattcatgtatactaaaaaattgtacattaattctgcatattacaacgatcctgctacaaactgaataattaatg |
1398952 |
T |
|
| Q |
473 |
atgaaaatggnnnnnnntaattaattaccttagcaaggagtatgaccaaaggacctcattggaaggtccatacttattgaccaaggatcataacctatg |
571 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1398951 |
atgaaaatggaaaaaaataattaattaccttagcaaggagtatgaccaaaggacctcattggaaggtccatacttattgaccaaggatcataacctatg |
1398853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 1399453 - 1399252
Alignment:
| Q |
24 |
atcataaatgataatgatctctagagttttggagagaataacaaaacaaagtcaacaagtaatcaaggaagcaacgatcatcaaagcaacatattcctat |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1399453 |
atcataaatgataatgatctctagagttttggagagaataacaaaacaaagtcaacaagtaatcaaggaagcaacgatcatcaaagcaacatattcctat |
1399354 |
T |
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| Q |
124 |
gagcctctcccatcag-nnnnnnnnatcagaaaaaacacatcttaatgcatttttgtttacaagttattagttccaatgcatcaaaatcaaattgaagag |
222 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1399353 |
gagcctctcccatcagtttttttttatcagaaaaaacacatcttaatgcatttttgtttacaagttattagtttcaatgcatcaaaatcaaattgaagag |
1399254 |
T |
|
| Q |
223 |
gc |
224 |
Q |
| |
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|| |
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|
| T |
1399253 |
gc |
1399252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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