View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_low_27 (Length: 553)
Name: NF1390_low_27
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 30 - 308
Target Start/End: Complemental strand, 7460842 - 7460567
Alignment:
| Q |
30 |
acaagctgggaataactgagacataagcatcatttggtcttgatgatgattcattgttatatttttgtgtcttttgttactaactgtctcaatctctctt |
129 |
Q |
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| T |
7460842 |
acaagctgggaataactgagacataagcatcatttggtcttgatgat---tcattgttatatttttgtgtcttttgttactaactgtctcaatctctctt |
7460746 |
T |
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| Q |
130 |
tgtttctaataacactcacttgctatcctaaaagattgagaactttgtttttggagacaacata---agggcttgtatgtatttataatagggtgaaata |
226 |
Q |
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| T |
7460745 |
tgtttctaataacactcacttgctatcctaaaagattgagaactttgtttttggagacaacataattagggcttgaatgtatttatagtagggtga---a |
7460649 |
T |
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| Q |
227 |
atgttgcgtgtcgtcttaggcttagtgatgaaggctatgaaagtgcctcatattgtgttctaatttgcagatggtgccattc |
308 |
Q |
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| T |
7460648 |
atgttgcgtgtcgtcttagccttagtgatgaaggctatgaaagtgcctcatattgtgttctaatttgcagatggtgccattc |
7460567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 341 - 546
Target Start/End: Complemental strand, 7460533 - 7460329
Alignment:
| Q |
341 |
gttgttaatactcaatacatgttgtacgtacggaaaaagcacatgcaatatatcataaataagatatactcctactatatatgtttaaaatgtgattata |
440 |
Q |
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| T |
7460533 |
gttgttaatactcaatacttgttgtacgtacggaaaa-gcacatgcaatatatcataaataagatatactcctactatatatgtttaaaatgtgattata |
7460435 |
T |
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| Q |
441 |
cgtatactctttacaccattttattttatgaagtgctttatttaaacagaaaaagtcatagagttgataggatcccatttaaaatataattgaaatgtct |
540 |
Q |
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| T |
7460434 |
cgtatactctttacaccattttattttatgaagtgctttatttaaacagaaaaagtcatagagttgataggatcccatttaaaatataattgaaatgtgt |
7460335 |
T |
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| Q |
541 |
gtggtg |
546 |
Q |
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|||||| |
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| T |
7460334 |
gtggtg |
7460329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 7445898 - 7445771
Alignment:
| Q |
30 |
acaagctgggaataactgagacataagcatcatttggtcttgatgatgattcattgttatatttttgtgtcttttgttactaactgtctcaatctctctt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7445898 |
acaagctgggaataactgagacataagcatcatttggtcttgatgat---tcattgttatatttttgtgtcttttgttactaactgtctcaatctctctt |
7445802 |
T |
|
| Q |
130 |
tgtttctaataacactcacttgctatcctaa |
160 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7445801 |
tgtttctaataacactcacttgctatcctaa |
7445771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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